tspan31 (tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386)


Basic Information

Item Value
gene id tspan31
gene name tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20719865 ~ 20729933 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921277.2
AGCTCTgatttacccacaatgcactgtgaagcgctgcTCGCAGTGTTGCCGAGTGGCGCCTCTCTGTAGTCTGTGGATGGTTTGTGGCTTTGGCAGGTTGGAGTAAGCATCCTGTTAGCTCGGTGACTGTAACAGTTAGCACGGAGCAGCTCAGTGACTAGCTCACAGCGGGGAGAAGAGGAGCTGTAGACTGTAGATTAAATGCCTCAGGGTTCACCATGGTGTGTGGAGGATTTACCTGCTCGAAAAATGCGCTTTGCGCTCTCAACGTCGTTTACATGTTGGTGGGGCTGCTCCTGATTGGTGTAGCAGCATGGGGGAAGGGCTTCGGGATCGTGTCCAGTATACACATCATTGGAGGCGTGATTGCTGTGGGCTTTTTCCTGCTGCTCATCGCCATTGTGGGCCTCATCGGAGCCGTCCATCACCACCAAGTCATGCTGTTCTTTTACATGGTTATTCTGTTCATTGTGTTCCTCTTCCAGTTTGGTGTGTCCTGCTCTTGTCTGGCCATGAACCAGGATCAGCAGGAGCAGTTGATGACCTCCACTTGGAGTATGATGAGCAATAAGACCAGGGTAGATTTGGAGAAGAAGCTGGACTGCTGTGGCCTGTTCAACAGCACTGCAGACCACCATGAGTTCGATACTGACCGGGCGTTGTGTGAAGCTAACTGTTTAAACACTCAGAATTGCTTAACGTGTGGTCAGAAAATGCTGCAGCATGCGTCCGAGGCCCTGAGAATTCTGGGTGGTGTGGGTCTCTTCTTCAGCTTCACTGAGatTTTAGGAGTTTGGCTGGCCATGCGCTACAGGAACCAGAAAGACCCCCGGGCAAACCCCAGCGCATTCTTATAGTCTCCCAGCCTCCTCCGTGTCCCACAGTGCAGCATCGCAGATTCCTCTTCCCTTTGCACACCCGGAGGCACTCAGGCATTCAGCATGGACTTCAGACTGAACGCTGACATGTTGCTCTCTACAAACCATCTCACTGATTTTATGGCACCAAGAGCTAAAGAGCCCATTTAAAGAaaattctcttttctctctagaatctggtcattttttttcttacatagtGAAAACAAAAGCTGGACGTCTCATGAATGATAGGATGATGTTCGGTATTTATGTCTAGATCTCCAGTCCCATGGTGTGACCTACATCATGACCCCTCCCATCCTTGATTTGAGAAAAAGTGTCCTGGACAGAGATTCAGCATTAATATCTGCATGCTTATAGCCATTACTACAGCTGGTCCACTCTGTTATACTCCACCCGGCAGATCCTCAGTCATTATTGTGCTCCATATAGTTTTACCATTGTGGGCTTTTAGTGTCAGTGAAGCAGGTAGTTCATAGATTTTTATGTGAGCTGGTCAAGGTGTGACATCTGTGATACACGGCAAACTTTACTTCCTGCTCCTTTCAGATGTTTCTTGCTAATGTGAGTTGTTGTTACAGATGTACGATGTGAGAGTGCTAGTTGAGGAATTAGGATTTTAGTTCAATATGTTGTGTAACTGAGCCATGCAGAAGCCAGCAGACTGCAGCCCTGATGTTGTGTAAATACACGTGTCTCCGTGACGGGTTGCGTTTCTCATACATACACGTTTCATTTGCTTCTCGCTGAGGTACTACCCGCACTGGACCTTTAACACACGTTTCTTGGTATTACTCTCAGATATTGTGTTTTTGCAATATAGTGAATTACAGACTCGCTTTTTTGTGCTATAACCTGTGGGCAAAGTTCTTCCAGTGCCATCACTTTAATCCAGGTGTCTCATCTCATTCGCCTCTTAAGTCAATATTAGAgtgtgtacattttttcataatgaattttttttaatgttttgtcaAGTTCTCTATAACACTTGTTTGTCAAATAAGTATTAGTTCTACATCTTTGTTACTGTTATTTCTTGAAAAAGATTCTGGTTAGCTCTCAATTTCTCTCACTTTTATGCCTCCGCCACTAGGCGGTGTACAAATTTGTAGCATGTTGGCGACGGAGGCACTGCCATccgagttctacttgtttattttctgttttatttttgccatTCTACTTCACACTTTCATTGTTTGCACCATTTCTCCTTTTGCATTTAAAAGTATTAAGGTTAAGGCCATTCAGGTTTGTAAGTTATTTGTATGTACTGTGTTCTAAATAATTATAACTCTGCTAATCTTACTTTCTTTTTGCTAAGTTTTCTTTCATCTGTTTAATCATTCTTCACACCTTCagtcttaacttttttttcGTACTGATTCagtccaggttttttttttcttcaaaatctCCTCTTTAAGTCTCATTTCACTTCCGATAACTAGGATGCACTGAATTTTCACaatgcatattaatattattgtgtaTATGTGCTAAAGGTCATTGGAGTACTAGTATTGTGGCTGTTTTGCCAAATATTCAGAATGTTTCTGTGgccatttcttttctctcattatttaatttattgccTTTATATAAGCAGGCCATGTTCTCTTTCATTATTCTCACAACTCTGTATGCACCTGCAACTCTTTTCCCGGATGTTCCTTGTATTTTTGGACCTGATTTTTTCCAATTAAAACATCTTGGAGCAAAATTTGGAAAACTGCCATGTGCCCCATTTTAAAGGAAAGTGCTTGAATGAAGTAAAGATTGAAGTTTTCTTTATTCATATCCATTTATTTTGTTCTATAGTGCACTTTTCTGTACAGAGCTACCAATAAATAGATCCACTTACATGATCTGTAAAGTGCTTTGGCCCAACTGATGAGCAGCGATATTCATGTGTTAAGTTCTAACAATTCCAACAACTGAACAAATTCAAAAGATTTCAAATAAATCACCACACTAACTCTC

Function

symbol description
tspan31 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN31 (tetraspanin 31).

NR:

description
tetraspanin-31-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921277.2 True 2867 mRNA 0.42 6 20719865 20729933

Neighbor

gene id symbol gene type direction distance location
LOC113530407 gpr182,LOC108275868 coding upstream 28251 20689186 ~ 20691614 (+)
LOC113530755 gpr182,LOC108275868 coding upstream 33087 20684365 ~ 20686778 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 39795 20668113 ~ 20680070 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding upstream 53808 20661406 ~ 20666057 (+)
lima1a LOC108275931 coding upstream 109152 20586167 ~ 20610713 (+)
march9 march9,LOC107593952,LOC107599679 coding downstream 7811 20737744 ~ 20751871 (+)
LOC113530777 LOC108276216 coding downstream 153759 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 170189 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 189155 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 267736 20997669 ~ 20999732 (+)
LOC117599266 NA non-coding upstream 7907 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 20197 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 38927 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 62798 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 143076 20567790 ~ 20576789 (+)
G258362 NA non-coding downstream 56309 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 178883 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 245965 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 355449 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 363396 21093329 ~ 21093844 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 205670 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 321151 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1014802 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1240970 19478302 ~ 19478895 (+)
pkig NA other upstream 1497306 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 173172 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 498387 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 808112 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1941465 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2641811 23371744 ~ 23383653 (+)

Expression


Co-expression Network