LOC113530929


Basic Information

Item Value
gene id LOC113530929
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22801924 ~ 22810621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921337.2
GATTCATGGAGCAGATGTCAGTGGCTAACAACTGACAACTGGGAGGCAGCCAAGCGTACATGTGTGAGCTgacttgtgtatgtgtgtgaagaaaaTATGTAATCTGACCTTGTGAGGGTTGAGCAAGTGTAACATGGGTGGGAGTTACAGTCAAAGGAGTTGAgaacctcctctctctctctgctacaCACTCTCACGGAACCATATACACTTTCTCAGACATGTTTAGGTGCTCACATCTGGACTGAAGAGAAGAGGAGTACACTTGCTCAGTGAGGATGATTTGGAAAACAGCTTTGCACTACGCCCGATTCTGGCTCGTCCTGGCTTTAGTGTCTGGCCAGCTCACTGCAGAACAGAAGGAGCAGATCTTGGATTTGCATAACCGGTACCGCTCTATGGTCAGTCCTGAGGCTGCCAATATGCTACACATGAGATGGGATGAAGGGCTAAGTCTGGTGGCTCAACATTATGCTGCTCAGTGCATTTGGGAGCACAACTACGATGTGTTAAACCAGCTGGGAGAAAACCTCTTCCTCACCACCGGTCTTCTAAGCATCAACAAATCCATTGCTAGATGGTTTGAGGAACGCAAATATTACAACTATGCTAACAACACATGCAGCTTAGTTATGTGTGGACattacacacagTTAGTGTGGGCGAAGAGCAACACCGTCGGCTGCGCCTCACACTTCTGCAAGACGGTTCAGAATCGAGACGATGAGAACGCTACAATTCTTGCCTGCAACTATTTCCCACAAGGGAATATAGAAGGAGAACTACCATATGAAGCAGGAGAGCCATGCTCTAAATGTCCACAGGAGATGGTTGAATGTTTAGAAAATAGCTGTGCTCAAATTGAAAGAACAACAGAGGAGTCCAGTACAGACACGTGGGCAACAGACACACCTCAGATGGAGCCCGTGGATTCAGCAGGATTTATAAAACTCTCAGTGGCTACACTACTGCTCGCTGGTCTGATGGCTTCTTTTATATTCTAATGACTTGAACACGTTCGCACAGTAAATGCCACCAATGCTGACATCTAATCCCAGGAAATTTCAATGCATCATGGATGATGTTCCTCGGATGAGTTCCTCCTGTTGACTTGATTCATTACCACTAGATCTTCACAAATGACAGCGCTCGTATCAAATGTTAGCGGCTGTTTTAGAGCCGCTTCCGATTATATTTAGTAATCATATGGAACGGATACATTTGTGTGTGGCGAAAAGGGCACCACAGGGTCATGTGTAAAAGCTACAGTATgtgagatttctttttttttcttaaatatcataattattaCCGTTATTATCAGTCAAGAAAAATACTCTAAAGCACTTacaatcctgtaatagtaaAATCACATCAATAGACAGACAGAGCTCTCGGGTTCAAACCTCAAAAGACACTTCAAATGCACGCAGAGCTGATGGaggctagttagctaacagggaacacagatgaaaaaaatacacagagaacaaaTTATTCAAACGTAGtagaaatacacacaccaacagCGAACCGAAGTCAGAGTTCGCTTTTTCTCCACATTGTCttttatctagctagctataaATTTAGCTCACTGCTGTCGGCCTCGGAGCCACACAAAGTCCCGTCGAGAGCTTGTTTCTATGTTTCATCTACAAAATACAGTTTGTTTTATATATCTGGTTaatattagccagctagcttgcACTGTATACGCTGTCTTGTCTTCAGAGTTACACACATCTTTCAGATTAGCAGTGCATGAACAGACCTCTGTACAATCTGCAGCAGTCTCACAGGTGACATAGCGAGCTAGCCGGCTAACGCTAAATCACTTAATCCAAAGCTCATGCTAAAGGAAAGAAGTTTTGCTGATTTATTTAGAAATCAGAAAATGCGACAGTTGTGCACAGTATTCTCGTaatgtttctgtacattttaattctcataatatttctgtaatatttacagcAGCAGATAATTACATCTGTGAAAACTTCAACAGTGTCAGAAATGCATACTATTAGTGTTGCCTTTACTATTTAGGCCTAGTACTTGAATAAATAGGCACTGAGTGTGTATTAATTGCCTCACTCAGTTGTCCAACCACGTTACATAACGGACAAAAACATTACGATTAGCTTGCAATACCATTTTAGACAACAGAGAGACATTTTCAGCTCCAGCTGCTCGTACTGAATTTAATGCGTAAGGTACTTGGGCTCACGTTGTAATGAATAAAGTTTAGATTATTTAATTTGAAGTGTACAGCAAAATGTATGAGTGAAAACATTGTATGACTCACTGAATTGAacattataatgaatattttttatatacagtcgAATGTCATGTGTTGTTTTACTATATCAGTAATGCACTGATTTGTGATGAAACACAGTCTGGAAAAAGAAATCAACCTGGAATTGAGTGAAATAACTGGAGTTTCATAAGCAACAGAAAGTCTGGACATATTGTGTGTTATTAGACctcagcatttatttttattaaactttattaaaaaaaaaaaaaaacatcgacACTTAACTGTAGATGTgtaaatctgtttgtgtgtgttgtatttcattaaattttatttttttaaaatcactgaataaaaaaaaactaaacatttGATTTTCCTAATAAACAAGCTTTTCTAACcctaa

Function

GO: NA

KEGG:

id description
K20412 PI16, CRISP9, CD364; peptidase inhibitor 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921337.2 True 2672 mRNA 0.40 6 22801924 22810621

Neighbor

gene id symbol gene type direction distance location
pdyn pdyn coding downstream 39904 22758451 ~ 22762020 (-)
LOC113530789 LOC108275917,LOC108439484 coding downstream 60370 22733952 ~ 22741554 (-)
LOC113530805 LOC108275557 coding downstream 159635 22631289 ~ 22642289 (-)
LOC113530559 fndc7 coding downstream 179993 22580152 ~ 22621931 (-)
fbxo30b LOC108276409,LOC108439483,LOC107735267 coding downstream 222897 22570446 ~ 22579027 (-)
LOC113530928 NA coding upstream 2383 22813004 ~ 22822197 (-)
pfkfb2a pfkfb2a,LOC108276158,LOC108439471,LOC104942567,LOC103358644 coding upstream 175837 22986458 ~ 23004607 (-)
dlgap4a LOC108276061,LOC108439469 coding upstream 209109 23019730 ~ 23126956 (-)
rprd1b rprd1b coding upstream 370988 23181609 ~ 23186306 (-)
ctnnbl1 ctnnbl1,LOC107694421 coding upstream 434108 23244729 ~ 23279510 (-)
G259724 NA non-coding downstream 13945 22742744 ~ 22787979 (-)
G259692 NA non-coding downstream 144995 22653338 ~ 22656929 (-)
LOC117599239 NA non-coding downstream 332171 22467663 ~ 22469753 (-)
G259337 NA non-coding downstream 377682 22422592 ~ 22424242 (-)
G259294 NA non-coding downstream 430835 22341861 ~ 22371089 (-)
G259811 LOC100697131,LOC105901900 non-coding upstream 195739 23006360 ~ 23010550 (-)
G259809 NA non-coding upstream 200228 23010849 ~ 23012362 (-)
G259812 NA non-coding upstream 206685 23017306 ~ 23018360 (-)
G259838 NA non-coding upstream 210740 23021361 ~ 23021570 (-)
G259839 NA non-coding upstream 211793 23022414 ~ 23022680 (-)
G259306 LOC108275814,LOC108411446 other downstream 352497 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 753536 22016047 ~ 22048388 (-)
fyco1a LOC108275732 other downstream 847262 21925244 ~ 21954662 (-)
trnaq-uug_7 NA other downstream 1447227 21354439 ~ 21354697 (-)
G258580 map7 other downstream 1632226 21168986 ~ 21169698 (-)
si:ch73-217n20.1 NA other upstream 150957 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 381636 23192257 ~ 23240347 (-)
e2f1 e2f1 other upstream 498278 23308899 ~ 23317464 (-)
G260310 NA other upstream 953053 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 1162744 23973365 ~ 23979695 (-)

Expression


Co-expression Network