znf740b (znf740,LOC107714993,LOC107664257,LOC107599665,LOC107706997)


Basic Information

Item Value
gene id znf740b
gene name znf740,LOC107714993,LOC107664257,LOC107599665,LOC107706997
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20557604 ~ 20566597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921338.2
GAGCGCCCTCTGTTGTACCGGAAGAACCGATACAGGCGCTTGGTCACGTGCCACGCTCTCCCCTGAGAGCACTTCCGGTggtgtttcctgtgtttgtaaactgggggaaaaaataggaACTCCGACGAGAAATATTGCTCGCACAGAAACGGAagTGCGACGCTCTCTCTCCCCcccaacacacgcacacacatcacTGCGATGTCACAGCTTTCCAACAACCCAGTCCGAGACCACATGAAATggGCTGGGTTGCTGGGCTGTGAGGCAGTGCTCTCCAGTATGGCTCTGATGCAGGCCAGTTCTCCACCCAGCCATAAAAAGATGGCGTCTCCACTGAGCCAGAACCACAACCACAGTCACAACCAGGAAGCCCACAGTCACCACAGTCACATGGTGCTACCTTCTGGAGTCAGCTGCTCACCCATGCTCATTAATAAGGATGGAGAGTTCCACTCTTCCCGGCTGCTGGAGGAGAAGGACATGCAGTCGAGCCAGAACGCGCAgtcaaagaagaaaaacaggaagtcaggaaCACCGAccaaagtgagagaaaaagtgcAGGTGGAGATGCCTGAACCAAGCGATGACGGTTCTCTCAACTCCCAGGTGCAGAAGAACTTCATCTGCGAGCACTGTTATGGAGCGTTCCGCAGTAGTTACCACCTCAAACGACATATCCTCACTCACACAGgtgagaaGCCATTCGGGTGTGACATGTGCGACATGCGGTTTATTCAGCGCTACCATCTGGAGAGACACAAACGTGTGCACAGTGGAGAGAAGCCTTATCAGTGTGACCGCTGTCAGcagaACTTCTCCAGAACAGACCGGCTCTTGCGGCACCGGCGCATGTGTGTCGTCGGCATCCCTAAGGAGGAGAACACGTCGTGCTGTGAGGGACGATCTTATTCACAGGAACCTGCGCAGCAGTCGTGGAGCCCCCTACAGgccaacaacagcagcagccgGCTTGCAGTGTGACGGCTTTCCGAAGCCTCCGTTCAGCTCTGTGAGAGCAGGGTGGACTCAGCACATCCACTCGGGGACACTTTACTGCATCAGACTGATCCTGGAGACTCTGGGAAAAGACTCCATCTCTTGCTTCACTTCAACTTGGTCATATTCAGCTATTTTTTCAGCTGATTTGACTGATTTTTGTAGTATTTTCTATAGATGCTATCAGCCCCTGGGAGGGTTGGCGTAGTTTTTTTTGTACTGCACAGGCAATAATGAGTCATGTAGAGGACCAAGGAGTGGGTTAATCCTATGTTTAATAGTTACCGTGGATGGAGATTGGTTTACACGCACATAAGATGGTTTAATGTGTTACAAAGTCACAGAAAATTGTGAGCAGCTTTTCAGCCGTTGTCACATGTGGCCTTTTGATTTCTCCACCATTCTTCAATAGCATATAACCAAGAATAATTGAAAGAGGTGCTAAACTGCAGGACCCTGCGTTCATACTAGCAAGAGACAAGTCACTAAtgttgcttgtagtttgtctctaaTGACCACTACAGTTGTCGCATGTGGGCGTACACCAGGgcttcccaaactaggggttgcttgatttacaaaCGGGGCCATGAGAGAAACACAATCTCCTCTcttgtttaattcatttattttataaattaatattagaaatatcaaagaTGGATTCtctgtgctaatattttgaaatgttactcaGAAATGTtacttctggattttctagattacttttgaatgtaaggtcagagttttaaatttgaaatgcagaccatgacaacaatcacgacaaTGGCGGACAGAGCtcctcagtgtgtttaacattgctgtgcatgaaatcgcaaaacattttacagttcgacttggaaacctgatggatgGGGATGTCTTGGCTCTAACATGGCATCTAGTGAATGTCATTTTCGAGAGTGTGAACAATGACACTTGCGGTACTGCTGCTTCTGCACCAAAAATCATTTggcaagtataaaccaggctcctCTGCTAGATATCTGACTGTATTTACATCTGGAACAAACACATGGGGTTGGAgttgcagaaaattcataatgtccatttttgGGGTCGTTTGCTCAAAACGTTTGGGTGCCCCTGGTGTACACTGTCCGGCGTTTATTATTTCCAATGACAAACAGTAGTAGCCAAAATGTTACTGATTCTAAAGCtcactagttaaacacaaattaaataatgcactagtCAGAGTGAAAattggttatttgatttacatgttaaatGCCAGGATTCATTCTAGCCTTGTTgacagattagcaaagcaagctttTGTTAGAACGgaataagatgaaaccacagttataagAGTTTCTTCCATATTTGCATCAAACAGTAAACTAAAGATTGCGAGTGAGGAACTGACGAAATGTCGGACCACAGATGGGGAATCATTCGACTCAGTTGTTTGTATTTGTTGCTTGTCGCTTGCCACTGTCTCTCAAGTCGTGACTCTGGGACAAGTCATGGTACATAGAACATAGAGAATAATTAGTGGTCTGTTGCTTTGTGGCTTGCTAGTGTAAACACAGGGTAAAACACaacaactgaaatatttttcccaataaatccattttatttCGAGACAGTTTGGGAATATTAGGCTCTTAAAGGTGTAGAAAGAAAGAGGTTTACATTTAGCCATGGTAGTTTCATTATGCCACTGAAAATTGCTATCACCTGTTAGTTctaaagaagttttttttaatccacattCATAATGATGATATCAAAGAAGAAACGAAATGTATCACTGCAATACCTCCTATAGGTCTAGGAATTCCATTTACATTtggcagacgcttttatccagagtgactaaGAAAAAGTGGTCCACTGTGATTCAGGTCCTCACTGTAATGCATTTCTGTACGTTTGTGTGCATAGAACTGTTATTTTTGAGTCCAGATTAGaaatgtgtgaacatgtgtgtgagttttttttttttgttgtttttttttccccaatcaaTTCCTGATGCTGTTTATCGAGTACAATTTTCTGGACTCGAACACTGGATCAGTTGGCCCAAATAAGGCTAACggtgtgtgtgctttttagcatttagtcatttttatatatgaaCCAGTAGTTCCTTAGAAGGCCAGGTACTACAGActttaaacactgaacaaagACTACATGCAGATTCATGTGCtgaatcttattttattttgtttttaacattttctgtagtTCTTAGACTGCTACAGGTGTTTAACCTAGTAGCCACGTTTTTATAACAAGTAGATTTGCATGAACCTCCGTTCCTCAAACATCTTGTATTGTGTTtgctaaagaaagaaaaaaatgtatttttttgtacccgttaataattttttttttgttttttgtatttttatcatGCGCAAAACATGCACACTAAAATCTTTCTTACCCAGCTAGGCACTGCGTAGTGAGTGGAAATATAGGTTCTcagaaaacaataaattaatttctttttccaga
>XM_026921339.2
TCGAGCGCCCTCTGTTGTACCGGAAGAACCGATACAGGCGCTTGGTCACGTGCCACGCTCTCCCCTGAGAGCACTTCCGGTggtgtttcctgtgtttgtaaactgggggaaaaaataggaACTCCGACGAGAAATATTGCTCGCACAGAAACGGAagGCTGGGTTGCTGGGCTGTGAGGCAGTGCTCTCCAGTATGGCTCTGATGCAGGCCAGTTCTCCACCCAGCCATAAAAAGATGGCGTCTCCACTGAGCCAGAACCACAACCACAGTCACAACCAGGAAGCCCACAGTCACCACAGTCACATGGTGCTACCTTCTGGAGTCAGCTGCTCACCCATGCTCATTAATAAGGATGGAGAGTTCCACTCTTCCCGGCTGCTGGAGGAGAAGGACATGCAGTCGAGCCAGAACGCGCAgtcaaagaagaaaaacaggaagtcaggaaCACCGAccaaagtgagagaaaaagtgcAGGTGGAGATGCCTGAACCAAGCGATGACGGTTCTCTCAACTCCCAGGTGCAGAAGAACTTCATCTGCGAGCACTGTTATGGAGCGTTCCGCAGTAGTTACCACCTCAAACGACATATCCTCACTCACACAGgtgagaaGCCATTCGGGTGTGACATGTGCGACATGCGGTTTATTCAGCGCTACCATCTGGAGAGACACAAACGTGTGCACAGTGGAGAGAAGCCTTATCAGTGTGACCGCTGTCAGcagaACTTCTCCAGAACAGACCGGCTCTTGCGGCACCGGCGCATGTGTGTCGTCGGCATCCCTAAGGAGGAGAACACGTCGTGCTGTGAGGGACGATCTTATTCACAGGAACCTGCGCAGCAGTCGTGGAGCCCCCTACAGgccaacaacagcagcagccgGCTTGCAGTGTGA
>XM_034312135.1
CGAGCGCCCTCTGTTGTACCGGAAGAACCGATACAGGCGCTTGGTCACGTGCCACGCTCTCCCCTGAGAGCACTTCCGGTggtgtttcctgtgtttgtaaactgggggaaaaaataggaACTCCGACGAGAAATATTGCTCGCACAGAAACGGAaggtaaattaaaaataaacgtGTCTCCATAGCGCTTTACCTGTAGTGCTTAGCAGCGagggtttttattttgaaagacaGTCTGAACACGCTAAATGCGACGCTCTCTCTCCCCcccaacacacgcacacacatcacTGCGATGTCACAGCTTTCCAACAACCCAGTCCGAGACCACATGAAATggGCTGGGTTGCTGGGCTGTGAGGCAGTGCTCTCCAGTATGGCTCTGATGCAGGCCAGTTCTCCACCCAGCCATAAAAAGATGGCGTCTCCACTGAGCCAGAACCACAACCACAGTCACAACCAGGAAGCCCACAGTCACCACAGTCACATGGTGCTACCTTCTGGAGTCAGCTGCTCACCCATGCTCATTAATAAGGATGGAGAGTTCCACTCTTCCCGGCTGCTGGAGGAGAAGGACATGCAGTCGAGCCAGAACGCGCAgtcaaagaagaaaaacaggaagtcaggaaCACCGAccaaagtgagagaaaaagtgcAGGTGGAGATGCCTGAACCAAGCGATGACGGTTCTCTCAACTCCCAGGTGCAGAAGAACTTCATCTGCGAGCACTGTTATGGAGCGTTCCGCAGTAGTTACCACCTCAAACGACATATCCTCACTCACACAGgtgagaaGCCATTCGGGTGTGACATGTGCGACATGCGGTTTATTCAGCGCTACCATCTGGAGAGACACAAACGTGTGCACAGTGGAGAGAAGCCTTATCAGTGTGACCGCTGTCAGcagaACTTCTCCAGAACAGACCGGCTCTTGCGGCACCGGCGCATGTGTGTCGTCGGCATCCCTAAGGAGGAGAACACGTCGTGCTGTGAGGGACGATCTTATTCACAGGAACCTGCGCAGCAGTCGTGGAGCCCCCTACAGgccaacaacagcagcagccgGCTTGCAGTGTGA
>XM_034312136.1
gttgtgttgtgttgttgttgttgttgttgtgttgttatgGAGGGGGGGTTGAACAAACAGGACGGCCAGATCCCAAATACATTTCCACTGGATTTATAGGGCACTACACAGCTCAAGTGCGACGCTCTCTCTCCCCcccaacacacgcacacacatcacTGCGATGTCACAGCTTTCCAACAACCCAGTCCGAGACCACATGAAATggGCTGGGTTGCTGGGCTGTGAGGCAGTGCTCTCCAGTATGGCTCTGATGCAGGCCAGTTCTCCACCCAGCCATAAAAAGATGGCGTCTCCACTGAGCCAGAACCACAACCACAGTCACAACCAGGAAGCCCACAGTCACCACAGTCACATGGTGCTACCTTCTGGAGTCAGCTGCTCACCCATGCTCATTAATAAGGATGGAGAGTTCCACTCTTCCCGGCTGCTGGAGGAGAAGGACATGCAGTCGAGCCAGAACGCGCAgtcaaagaagaaaaacaggaagtcaggaaCACCGAccaaagtgagagaaaaagtgcAGGTGGAGATGCCTGAACCAAGCGATGACGGTTCTCTCAACTCCCAGGTGCAGAAGAACTTCATCTGCGAGCACTGTTATGGAGCGTTCCGCAGTAGTTACCACCTCAAACGACATATCCTCACTCACACAGgtgagaaGCCATTCGGGTGTGACATGTGCGACATGCGGTTTATTCAGCGCTACCATCTGGAGAGACACAAACGTGTGCACAGTGGAGAGAAGCCTTATCAGTGTGACCGCTGTCAGcagaACTTCTCCAGAACAGACCGGCTCTTGCGGCACCGGCGCATGTGTGTCGTCGGCATCCCTAAGGAGGAGAACACGTCGTGCTGTGAGGGACGATCTTATTCACAGGAACCTGCGCAGCAGTCGTGGAGCCCCCTACAGgccaacaacagcagcagccgGCTTGCAGTGTGA

Function

symbol description
znf740 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
zinc finger protein 740-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921338.2 True 3495 mRNA 0.43 7 20557604 20566595
XM_026921339.2 False 895 mRNA 0.54 6 20560115 20566597
XM_034312135.1 False 1078 mRNA 0.53 7 20560115 20566596
XM_034312136.1 False 946 mRNA 0.54 7 20560115 20566315

Neighbor

gene id symbol gene type direction distance location
cbx5 cbx5,LOC103047453,LOC107714996,LOC107664188 coding downstream 47896 20499278 ~ 20509708 (-)
calcoco1a LOC108275893 coding downstream 270391 20274622 ~ 20287213 (-)
nr1d4a LOC108276259,LOC108433411 coding downstream 335491 20205272 ~ 20222113 (-)
mfsd5 mfsd5,LOC107664134,LOC107594050,LOC107599659,LOC107599644 coding downstream 355859 20198866 ~ 20201745 (-)
jph2 jph2,LOC108275945,LOC104967021 coding downstream 377914 20155949 ~ 20179690 (-)
csad csad,LOC107599458,LOC107706996,LOC107697858 coding upstream 1192 20567789 ~ 20577934 (-)
zgc:174906 NA coding upstream 14010 20580607 ~ 20586424 (-)
spryd3 spryd3,LOC107714925,LOC107664113 coding upstream 47071 20613668 ~ 20658178 (-)
LOC113530420 zbtb39 coding upstream 125209 20691806 ~ 20698192 (-)
agap2 LOC108275864,LOC108433387 coding upstream 132526 20699123 ~ 20718020 (-)
G258242 NA non-coding downstream 33959 20522552 ~ 20523645 (-)
G258189 hnrnpa1,LOC108275986,LOC108275985,LOC107707002,LOC107697928,LOC107598948 non-coding downstream 40891 20511166 ~ 20516713 (-)
G258232 NA non-coding downstream 70194 20470193 ~ 20487410 (-)
G258198 hoxc5,hoxc6,hoxc6aa,LOC102238163,LOC107593966 non-coding downstream 155344 20376338 ~ 20402260 (-)
LOC117599243 NA non-coding downstream 184424 20364055 ~ 20373180 (-)
G258258 NA non-coding upstream 23161 20589758 ~ 20593161 (-)
G258268 NA non-coding upstream 43714 20610311 ~ 20611059 (-)
G258411 NA non-coding upstream 209552 20776149 ~ 20776709 (-)
G258424 NA non-coding upstream 317202 20883799 ~ 20884095 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding upstream 334681 20901278 ~ 20902757 (-)
nfe2 nfe2 other downstream 32140 20518425 ~ 20525464 (-)
G258077 rarg other downstream 285697 20252170 ~ 20271907 (-)
mlh3 mlh3 other downstream 437655 20109782 ~ 20119949 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other downstream 448392 20100999 ~ 20109212 (-)
LOC113530994 NA other downstream 453693 20103774 ~ 20103911 (-)
LOC117599256 LOC103359731 other upstream 262791 20829388 ~ 20868004 (-)
camk2n1b camk2n1,LOC107664141 other upstream 406800 20973397 ~ 20976330 (-)
G258580 map7 other upstream 602389 21168986 ~ 21169698 (-)
trnaq-uug_7 NA other upstream 787842 21354439 ~ 21354697 (-)
fyco1a LOC108275732 other upstream 1358647 21925244 ~ 21954662 (-)

Expression


Co-expression Network