tcea2 (tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683)


Basic Information

Item Value
gene id tcea2
gene name tcea2,LOC107681409,LOC107551521,LOC107571665,LOC107705683
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 13440784 ~ 13451374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921347.2
GCCAAAAAGAGGATGATTAGTTTTAGTCTTCAAAATAATCATGAGAATTTATTTTCTATCTCTGCTAAGACAGGTAACTCGGGGAACAAGCGGTAGCAATTTTACTGGgcggaagaaaaaaaaactgcaagtCCCACAATCCCTCAGTTCACAAAAAGACGAGAGCTGCGAAAAAGGCAGCGGTTTCCATTCATTTGGGCATCAAGAGCGcgagaacaaaaacaacactacCGCGTTCTTCCTCTATAAATGGAGGTGCGACCTTAAGGAACAAGATAGGGTATTTTTAAACATGGCGAAAGACCAAGAAGTCGAGCGCATCGCCAAAAAGCTGGACAAAATGGTGCACAAAAACAACACGGATGGCGCCATGGACCTTTTAAGAGAACTCAAGAACATGAAGATGTCACTAGAGACCCTGCAGTCCACGCGGATTGGGATGTCTGTGAACGCTGTGAGGAAGCAGAGTTCAGACGAGGAGGTGCAGACTCTGGCCAAGTCTCTCATCAAGACCTGGAAAAAACTGCTTGATGGTTCTGACGGCAAGtcggaggagaagaaaaagggaCTACCCCCCCTTCAGTCATCGTCATCGAAAGACAGTCCTGGATCCAGTGACTTCAGtaagaaACCAGAGACGCCAAAGACTCCCACCACCCCTACGACCCCCACAACCCCTAAGATGACCTCGTTCCCCCCTCCTCCAGTAACCACTGACAGCGTACGCAATAAATGCCGAGAGCTGCTCGTCTCAGCCCTGCAGACGGACGATGACTACAAAACAATTGGAGCAGATTGTGAAGCTTTGGCAGCAGAGATTGAAGATTGCATCTACAAAGAGTTTAAATCCACTGACATGAAGTATAAGACTCGGTTGAGGAGCCGCATCTCCAACCTGAAAGACCAGAAGAACCCCGACCTGCGCCGCAATGTGCTTTGTGGCACCATCAGCCCCGAACGCATTGCCAccatgactgcagaggagATGGCAAGTGCCGAGCTGAAAGAGATAAGGAAGGCGCTAACTAAAGAGTCCATCCGGGAGCACCAGCTCTCTAAAGTAGGCGGCACTGAGACTGATATGTTTGTTTGTGGAAAGTGCAAGGGCAAGAGCTGCACCTACACACAGGTTCAGACTCGCAGTGCTGATGAGCCCATGACCACATTTGTGATGTGCAACCAGTGTGGAAACCGGTGGAAGTTTTGTTAAGAAGCATCAGGATTCTTCATGTAATCAAGTGACAGATTAACATTGTGAGAAGGtacttttgttacttttttttttccagaagaaatgtcatttttatactCATTTCATAGCTTTGTAATATATTCTGTATGCATATTGCTGTATATGCAAGAAAAAGCTGTTtgatgtaaattttattttatagcatttttttgtaCTGGGAGTATGTTCATTACCTTTAAGCGCTTGAGTTAACTGGACTTTGTAAGTCAGCATTAGCTCATTTGATACTGCTTTTGCCCCCCTGATGAAGCACTCTCTGCCTTTTTGTGCTTTCAATGCTGAGCTTGTCATGCTTAAAGATTTGTACAAATTCATTTTGCACATCAGTAAGATTTGTGAAAGTGTGTTGTAGATATGCATATGCAGATTATGCATTTGGTaacattattttacactttatttggaTAGTCATTTGTAGATGCTAAATGAATTTCCAGTGATCATTTACTGAATGAACAGTTCTAAGTATAGCCTGATATATTTGGTCAACTGAGAAATAACTGATTAGTCTGTCAGTGTCATAGATCATCTATAGCAGACCTTCCAGATAAAGTGGTACTTTTTCTTCTGCAGCTGAATAATGTGTGAAAAGTGGATCTGACTGATAACATTTGACATGTATGATAAACTTGTAGACCAATTGGTCTCAATAAATTTGGAGAAAGATATG

Function

symbol description
tcea2 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Is expressed in lens; olfactory placode; and peripheral olfactory organ. Orthologous to human TCEA2 (transcription elongation factor A2).

NR:

description
PREDICTED: transcription elongation factor A protein 2-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921347.2 True 1922 mRNA 0.43 10 13440784 13451374

Neighbor

gene id symbol gene type direction distance location
myt1b myt1 coding downstream 411897 12995420 ~ 13028887 (-)
LOC113530792 pcmtd2,LOC108440950,LOC107559486,LOC107747485,LOC107690852,LOC100536777,LOC107707759,LOC107558232 coding downstream 453647 12975444 ~ 12987137 (-)
slco4a1 slco4a1 coding downstream 785963 12615024 ~ 12654821 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding downstream 868276 12545673 ~ 12572508 (-)
snphb snph coding downstream 934821 12485170 ~ 12505963 (-)
sla2 sla2 coding upstream 174524 13625898 ~ 13632021 (-)
ndrg3b ndrg3,ndrg3b,LOC103029397,LOC108429301,LOC107724194,LOC107705728,LOC107696989 coding upstream 184438 13635812 ~ 13699042 (-)
phf20b phf20,LOC107594424 coding upstream 249062 13700436 ~ 13721730 (-)
si:ch211-218g4.2 LOC108275877,LOC108429303,LOC107724193,LOC107696985 coding upstream 281714 13733088 ~ 13813355 (-)
sulf2b sulf2,sulf2b,LOC108429304,LOC107724188,LOC107705722,LOC107693554,LOC107551524 coding upstream 363464 13814838 ~ 13947569 (-)
LOC113530405 NA non-coding downstream 238153 13201019 ~ 13202631 (-)
G254153 NA non-coding downstream 299565 13141011 ~ 13141219 (-)
G254107 NA non-coding downstream 470773 12968364 ~ 12970011 (-)
G254110 NA non-coding downstream 507645 12932725 ~ 12933139 (-)
G254109 NA non-coding downstream 508364 12932219 ~ 12932420 (-)
LOC117599295 NA non-coding upstream 12817 13464191 ~ 13465215 (-)
G254568 cables2 non-coding upstream 139126 13590500 ~ 13590970 (-)
G254587 NA non-coding upstream 163054 13614428 ~ 13614663 (-)
G254599 NA non-coding upstream 213519 13664893 ~ 13665473 (-)
G254600 NA non-coding upstream 241423 13692797 ~ 13696620 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 156899 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 506476 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 1272989 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 1581438 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 1872181 11549394 ~ 11568603 (-)
LOC113530423 LOC108276099 other upstream 677589 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 1247898 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1807111 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 2206962 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 3196449 16647823 ~ 16695031 (-)

Expression


Co-expression Network