copz1 (copz1,LOC107664248)


Basic Information

Item Value
gene id copz1
gene name copz1,LOC107664248
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20537706 ~ 20544797 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921356.2
GTTCGTGGAGTACCTTCCGCGTACGGTTTGACCTTTCACCCCATGATGCAGGCGGAAGTAGAAACTACTCACTAACATCGGGAACACGGTTAGCTACCGCTGGAAGGATGGATACGCTAATTCTGGAGCCCTCGCTGTACACGGTGAAAGCCGTCTTAATTATGGACAACGATGGAGAAAGACTTTATGCCAAGTATTATGATGACACGTACCCTACAGTTAAAGAGCAGAAAGCTTTTGAGAAGAACATCTTCAACAAGAcacacagaacagacaGTGAAATCGCCTTGCTTGAAGGCCTTACTGTCGTTTACAAGAGCAACATAGATCTATATTTCTATGTTATCGGCAGTTCGCATGAAAATGAGttAATGCTCATGTCTGTGTTGAACTGTCTGTTTGACTCTCTCAGTCAAATGCTGAGGAAAAATGTGGAGAAGAGAGCCTTACTTGAAAATATGGAGGGCCTTTTCTTAGCCGTCGATGAGATTGTAGACGGAGGTGTTATCCTGGAGAGTGACCCCCAGCAGGTTGTACACCGAGTGGCCCTGAGGGGTGATGACGTGCCACTGACGGAACAGACAGTCACTCAGGTGCTGCAGTCGGCCAAAGAGCAGATCAAATGGTCTCTTCTACGATAGATCTCAGCAGTCTTTCTCTTCCACCAAGACAATGGTGCATTCGTCATCACTCCTCTCATCACTGTTgccttttccattttcttttttttttttttttgttccttatgTGTTTCGGTGCTGTGATATTGTAGACTCTTTAAAGGAAAAGATACATTAAATACGCTCATTGTACACCTTAAGAGAAGACTGAACAACAAATGGAGTCCTAACATTTATGCAAACTATCGTCCATTTATGATGACTTCTGTATCTGCATCACTTTTCagcatgaagtcatcactgttATATAAACCGTTTCTTTTCAGTAATCCAGACAAAGAGCGAGTGAGTACCTGCATTTCTGTCTTTAGCAGAGACTTTCTAATTATTCCACCCCAAGcggttttcagtgtgtgtgtgaggaaatacTCACAAGGCTGTGTGAAGGACAAATGTGATTCAAGTACATTCCAGTGAACCTTCCTGCTGTTTTCCATGGTCATgttatgatttaaataaaaatgactgtttTGCCATCGGGA

Function

symbol description
copz1 Acts upstream of or within lens development in camera-type eye. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ1 (COPI coat complex subunit zeta 1).

NR:

description
PREDICTED: coatomer subunit zeta-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921356.2 True 1162 mRNA 0.43 9 20537706 20544797

Neighbor

gene id symbol gene type direction distance location
hoxc1a NA coding upstream 90724 20439254 ~ 20446982 (+)
hoxc3a NA coding upstream 106653 20389157 ~ 20431053 (+)
hoxc4a hoxc4,hoxc4a,LOC108433407,LOC103034018,LOC107714997,LOC107598886,LOC107664204 coding upstream 123845 20411373 ~ 20413861 (+)
hoxc5a hoxc5 coding upstream 135163 20399696 ~ 20402543 (+)
hoxc6a hoxc6,hoxc6a,LOC108433405,LOC107593966,LOC103034651,LOC107664205,LOC107714999,LOC107706971,LOC107697939 coding upstream 138962 20394933 ~ 20398744 (+)
lima1a LOC108275931 coding downstream 41370 20586167 ~ 20610713 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding downstream 116609 20661406 ~ 20666057 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding downstream 123316 20668113 ~ 20680070 (+)
LOC113530755 gpr182,LOC108275868 coding downstream 139568 20684365 ~ 20686778 (+)
LOC113530407 gpr182,LOC108275868 coding downstream 144389 20689186 ~ 20691614 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 150893 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 428480 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 433666 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 438208 20099230 ~ 20099498 (+)
G257813 NA non-coding upstream 471698 20065477 ~ 20066008 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 22993 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 66744 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 118885 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 137573 20682370 ~ 20756538 (+)
LOC117599265 NA non-coding downstream 152188 20696985 ~ 20699668 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 23511 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 138992 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 832643 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1058811 19478302 ~ 19478895 (+)
pkig NA other upstream 1315147 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 358308 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 683523 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 993248 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 2126601 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2826947 23371744 ~ 23383653 (+)

Expression


Co-expression Network