spsb1 (spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103)


Basic Information

Item Value
gene id spsb1
gene name spsb1,LOC103042472,LOC107716103,LOC107703063,LOC107687410,LOC107591103
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 9470072 ~ 9489862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921378.2
AGCTATTTGACCACGTGACCTTAAGGGCTGGTTCTCTTGTTGTAGCAGCCATCATATCAGCCTAATACAAGTCCTGATTAAAGAAAGCAGAGGAGCTGAGGAACAGGGCGGACAGCCATGGCTTTGCACAGGAATACCGTTTAAAAGAAGCGTCTATAAACGCTGCTAGGCTTATGCTTCGTTTTCGCGTGTAGGCCACATCAGCTGCAGGTGGAGTAATTGGTGCCTAATTTGACCTGGTCTTGTGGCGCCTCTTGATCCAGAAGCATCACGACTCTTGAGGTCTGTGGCGGGGCCGAGGTGAAGGAGCGGAACCCCGGCCATCTTTGCTGTTTGCCATTCCTTGCTGGGTTTTGTGGAGGGAGGGAGACTCAAGGCACCATCTGAACCACCCAGAGCATGGGGCAGAAGGTTCCAGGGGGCATAAAGACCGTGGACATGCGGGATCCCGCGAGCCGGCCGCTCAAGCTGCAGCTACAGGCCCTTGACTACAGCAAACCACCACGGTTGGACATGCTACTGGACATGCCACCTGCCTCCACCACGGTACAGGTGCAGCACTCGTGGAACAATGATGACCGGTCGCTTAACATCTTCGTCAAAGAGGACAACAAGCTTATTTTCCATCGGCACCCGGTGGCGCAGAGTACGGACGCCATACGCGGTCGTGTTGGCTACACACGTGGCCTTCACGTCTGGGAGATCTCCTGGGCCCTGCGTCAGCGTGGCACTCATGCTGTGGTGGGCGTTGCCACTGGGGAGGCCCCTCTGCACTCGGTAGGATACACAGCACTGGTTGGGAACAACAATGAGTCCTGGGGCTGGGACCTGGGCCGAAACAAACTCTACCACGATGGCAAAAATCAGCCCAGCAAGACCTACCCAGCCTTCCTGGAGCCGGACGAGACGTTTGTTGTTCCAGATTCGTTTCTGGTGGTGCTGGACATGGATGAGGGCACTTTAAGTTTCATCGTGGATGGACAGTATTTGGGGGTGGCTTTCCGAGGACTGAAAGGCAGAAAACTGTACCCTGTAGTAAGCGCAGTTTGGGGACACTGTGAAATCAGAATCCGGTACATCAATGGGCTTGATCCTGAGCCCCTGCCTCTCATGGACCTGTGCAGACGTTCAGTGAGATTAGCATTGGGCCGGGAGCGACTGACTGAAATACATGGACTTCCTTTACCCGCCTCACTCAAGAACTACCTGCTCTATCAATGATAATAGGAGTGCCTTTACTTATTGTAAGGCGGAGCGGCTATTCtctctgggatgtttttttttttttttttttttttttttttttttccctgacagACTCGTTTTCTTAATtgcttttctcctcactttGGATTTTGGTACTTTGGGACTTTTGTTTTTACACCAAGGACACCTTGGTCTCACATTTGAAGTGTTTACGGTCATGTTTTGCGTCCACTTTTTAAAACCCTTGTTTTTGTGGCTTGCTTCAGTCATATCATATACTGAATACACAATTGGAGACGCACTGAACCCTGTGACACGAGCTGTCCCAGAAAAGAACAACGTGTCTGCATGGCTGGATGGAAAAGTGCAACGAGTTTGAAACCTCAGCTGTTTGCCATGATGGTTGCCTCTTTTTGTAGTTTCCTTTTTTCCGCCATTCCTCAGACTTTTTAATTAGAACTACATGGAGACGTGTGACAGGTTTAGCTTTTTGAATGCTGGATGTTGAATTGTAATTGGTATACTTGGGCATCAGTGATGTACCTGCAAACCTGGTTGAGCATGAATTTATTGAgatgtttttaaagtttttaatctCCTATTCGTTTCTTTCCCTCTCAGGATTGGCAGGAGAGATGTGACTGAATGTGAGATTCAAGACAGAGGGCTCTTTTTTAGCAGGATGCAAATACAAGTTGACTCATTGTAGCAGACTGAGTGCGTGGCAATGGCTTTCCCCCTTTCCTCTTGGCGGGTTAAAAATAGCCTGGTGTTAGCTCTAGCAGCGCTAGCTGTCTGGCTTGGGGAAACGGGATTTGACCTCTGTGTGTATAATGGAGGTTGAAAGGCTAGCACTTGCAAGACATTACACAGCTAGCATGTTCTAATTGCCTGCCTCGTTGCTCCTACAGCCAACATGTCCTTTCCTCAGTTAACACTGTAATATCTGAAGTGCCTGCCCATGGGAACTTTGAGATTAGAGAAAGAGccatgattttaaatgaaaagaagGATGGCATCACTGTGAAACTCTGCAACATTCACGAACAATAGTAAAAGCAGCAGGCTGTTTGGCTGTtggttctttttcttttaatatttaccTTCCAGTCAGTTTCTCTGTAGTTGAAACCAACCTTTAATTTTGGCATATTTgtgaaaaatgctgtttttaatcTGAGTCAGTGCTGAGAAGAAGGGGTAATGGCCTGGAAGTGTGAGTTAAAAGTGCATATGTTGTGACACTACTGTACCGTGCCTTGCCCATGAGCTAACCATTGACTCCCCTGGTGTCGATGGGGGAAAATTTGATATACTGATGAGGAAACGTTCAAGTTTCTTTGCCCAGCCCATTCTCAGTTTACTGCATAATCTTGTTTTAGATGTGCAAATGTAGTTTCCTGTCTGGCATCCAGCTTGCTGGGTGAtgttcagctttctgttcttgtgtCCTTCCTGCCTGCAGACCACCATCCTCTTTGTATTA

Function

symbol description
spsb1 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in brain; gonad; muscle; and otic vesicle. Orthologous to human SPSB1 (splA/ryanodine receptor domain and SOCS box containing 1).

NR:

description
PREDICTED: SPRY domain-containing SOCS box protein 1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921378.2 True 2692 mRNA 0.48 3 9470072 9489862

Neighbor

gene id symbol gene type direction distance location
ca6 ca6 coding upstream 52293 9411473 ~ 9417779 (+)
noc2l noc2l coding upstream 362849 9068705 ~ 9107223 (+)
perm1 NA coding upstream 448927 9006742 ~ 9021145 (+)
her9 hes4,her9,LOC107716081,LOC107593950,LOC107687478,LOC107737700,LOC107591146 coding upstream 510877 8957394 ~ 8959195 (+)
arhgef19 arhgef19,LOC103150465,LOC106926263 coding upstream 917679 8533132 ~ 8552393 (+)
phc2a phc2,LOC108434472 coding downstream 189740 9679602 ~ 9728769 (+)
ephb2a LOC108275960,LOC108434494 coding downstream 301916 9791778 ~ 9847969 (+)
lrrc38a LOC108275654,LOC108432618,LOC107737569,LOC107703049,LOC107712669,LOC107591108 coding downstream 366511 9856373 ~ 9867077 (+)
vps13d vps13d coding downstream 383149 9873011 ~ 9920124 (+)
rcc2 rcc2 coding downstream 496720 9986582 ~ 9997859 (+)
G251921 NA non-coding upstream 31276 9438560 ~ 9438796 (+)
LOC117599255 NA non-coding upstream 62374 9406507 ~ 9407698 (+)
G251800 NA non-coding upstream 63684 9403851 ~ 9406388 (+)
G251799 LOC108231175 non-coding upstream 68680 9358262 ~ 9401392 (+)
G251803 NA non-coding upstream 220809 9243314 ~ 9249263 (+)
G251988 NA non-coding downstream 52267 9542129 ~ 9543640 (+)
G252102 LOC108276488 non-coding downstream 165020 9654882 ~ 9656393 (+)
G252116 NA non-coding downstream 218233 9708095 ~ 9730055 (+)
LOC117599238 LOC108275881 non-coding downstream 454700 9944562 ~ 9946932 (+)
G252336 NA non-coding downstream 508822 9998684 ~ 10001448 (+)
LOC113530359 rnf223 other upstream 843047 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 1024467 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 1087889 8352779 ~ 8382183 (+)
atp13a2 atp13a2,LOC107593939 other upstream 1132006 8312773 ~ 8338066 (+)
htr6 htr6,LOC107738420,LOC107558748,LOC107664185,LOC107754887 other upstream 1213924 8253674 ~ 8256148 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other downstream 780941 10270803 ~ 10342428 (+)
si:dkey-32e6.3 LOC108276471 other downstream 1282809 10772671 ~ 10779860 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 1353749 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 1382167 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 1741516 11231378 ~ 11237367 (+)

Expression


Co-expression Network