zgc:194242 (LOC108276244)


Basic Information

Item Value
gene id zgc:194242
gene name LOC108276244
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 12401465 ~ 12406721 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921387.2
GTACAAGCTCCGCCTCCTCGGTGACGCACAACGGAGGACTTTGTGCACAGCCGTGTGTTTATTGTGGCAGTGACTGAAGTCTGAACAGCGCCGAAGAGTGCGAAGgccttcagaaagaaaaaaTTTGCAGAATGCTATCCAGAAAACTGGGCCAACAGCTGGGGCGACCCACTCAGTCCCTCTCTGGGTGGCTGATTACCAAGTTCCTGTTGAGGCATAACCAGATCCTGGAGGAAAATGCAGTGACACTGTGTGAGATCCAGCCTGATGAGACAGTGTTGGAGCTGGGTCATGGTCCAGGCCTGGGTTTGGAGGTAGCTGTCCAGCTCCTCACAGGGCCAGGAGGAAAGCTGTTCGGGGTGGATTACTCCAACTACATGCACCACATGGCCACAGAGAGGATGCAGGCGCACATAGCCAGTGAGAAAGTGACTCTGTACTGCAGTGATGTAGCAGCAATGCCATTAGAAGACAGCAGTGTGGATAAAGTGTTCCACTGCAATTGCTACTACTTCTGGCCTGATCTGAGGGCAGGAGCTTCGGAGATACACCGAGTGATGAAACCAGGTGGGCTCATGGTGACGACCCTCAGACTGGATCGTATTGTTAGATTTGCATCTAAGAAAGTGTTTCCTGGAGAGAACTGGCGACCTGAAGCCTACATGGAGGCGCTGCAGTCCTGTGGTTTTGCAGATGTCCGAATGGAGAACAGAACTGACAAGCTTATCCCATTTCAAGCAATTTATGCCACTGCTGCAAAAGGTGCATGAAAGGTGTGATGGAATGGTGACCCGCCTGCTTTTCGCCTAGTGTTACcggggataggctctggatccacaaccaccctgaccaggataaaacagttatggaaaataaatgaatcttgaagatacagtatatgtatatttctgctaattatttttatcatttagtaaaaaaaaatatatagttgtACAATGTTTGCACCAGATGAAAACATATCTTTAAGTGGATGTGAAAATGTTGGGCACTGAACAACAACTGATGTGCTTGGGTGTTTGTGCTTCATCCTTGTGGTAGTGCTGTGTGAGAGAACATCAGTGCTTCATTTTGAACACCCAAACATTGACCATAGGTTGATTGATGGGCCCCTCTCTCTGAACAACTGGTTAAACAGAAAGCAGGTTGGATAGATACGTAGCAACAGTTTTATTTTGATAATTgaattacaaaaattaattaaccTGGATTGTCATAGTCAGTGCTTTGTTTGCTTCATGAATGATTGACAAATGATCCTCATATTACTGGACCTTAGTGCCACTTTTGACACTGTGGACCACAATCTGCTTATTGGTTGTCTAAAACAGTGGGTGGTTTAACAGAGAGTGGCTCTTAAATGGTTTACCTCCTACAGCATAGGATATCCTCTGTGAATGTCAGTGATTTGGAGTTCCACAAGGTTCCATCCTTCATCTAATGAGGGAACTTCAGCCAGAAGCataatatttactttaattgCTATGCAGAAAACATACAGCTTTATGTCTTCCCCTGAAACCACGTGAAAGCTGCTCCTTAATGTCTCTCATTAATTGCCTTATAAGGATATTAAGTGTTGGATGGCATCCAGTTTCCTGGCAAGTCAGAAGATAGTATATTATTTGATCCTCCCATGTCACACTAACAGTCTTTTTAAGAATCTTGATCAATATCTGTTAAATTTTATGTCAAAATCCTTTGTGTTTGATTTGATTCAGACCCAAACATAGTCTGatacatttgttgttgttgttgttgttgttttttgttgctgtgtgtttgtgttaatttacCATTTTATGTATTCAAATTCTTATTTGATTTCTTGTACCATTTTACTCAATGTTCAGCACTTTGGTCTACACaggttgttttaaatgtgctttttaaataaattgtacttATTATTAGATGTCACATTGGATggcacaaatatttaaaaagaaagctcCTGCTTGGTAAGTGAAAGAGACTAATGTTGTCATCCCTATATTATGTAATGTTTCATGGAAGCAGTTTGATATTTTCCTGATGGTACAGCTGAAGTAGTAAAACATGTGACACACTAA
>XM_026921388.2
GTACAAGCTCCGCCTCCTCGGTGACGCACAACGGAGGACTTTGTGCACAGCCGTGTGTTTATTGTGGCAGTGACTGAAGTCTGAACAGCGCCGAAGAGTGCGAAGgccttcagaaagaaaaaaTTTGCAGAATGCTATCCAGAAAACTGGGCCAACAGCTGGGGCGACCCACTCAGTCCCTCTCTGGGTGGCTGATTACCAAGTTCCTGTTGAGGCATAACCAGATCCTGGAGGAAAATGCAGTGACACTGTGTGAGATCCAGCCTGATGAGACAGTGTTGGAGCTGGGTCATGGTCCAGGCCTGGGTTTGGAGGTAGCTGTCCAGCTCCTCACAGGGCCAGGAGGAAAGCTGTTCGGGGTGGATTACTCCAACTACATGCACCACATGGCCACAGAGAGGATGCAGGCGCACATAGCCAGTGAGAAAGTGACTCTGTACTGCAGTGATGTAGCAGCAATGCCATTAGAAGACAGCAGTGTGGATAAAGTGTTCCACTGCAATTGCTACTACTTCTGGCCTGATCTGAGGGCAGGAGCTTCGGAGATACACCGAGTGATGAAACCAGGTGGGCTCATGGTGACGACCCTCAGACTGGATCGTATTGTTAGATTTGCATCTAAGAAAGTGTTTCCTGGAGAGAACTGGCGACCTGAAGCCTACATGGAGGCGCTGCAGTCCTGTGGTTTTGCAGATGTCCGAATGGAGAACAGAACTGACAAGCTTATCCCATTTCAAGCAATTTATGCCACTGCTGCAAAGTAAAGCCAGAACagatctatctgtctgtctatctgtgcctttcactcacacacttgctCATCCCCTCATCCATTCCCTCCCTTACTTACACCCTCCAATTACACACCCATttatcacttatacactcacTCCTTCACTTACACACTAACTCTCTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCCatcacttatacactcacaaACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTCACAAACTCCCTCtatcacttatacactcacTTTTTCACTCACAAACTCCCTCCATCACTTATACACTCACTTTTTCACTTACACAATCCCTCAAACTCCTCTTACACTCTCCCTCACACTCCGTTTACACACTCCATTCATCACACTCACCCTCAGTCACACTctgctcacacactccctccctccttAAATCACCTTTGTTTTCACTCGAGAATTTTGCTACTTCCCCCCTTCTGTGTGACCACCCTGCATGCTAATGGCAGTGTAGTGGTATGAATGACAAATGCTACAGGACAATGGTGATAAATCATGATCAAATGATAACCAACTTTCTAATTGCATCAGCTCGATATTTTCTTCATCTGAATTTATAGTAAATCCATTTTATcaattcatttttgttattgtCACCTAACATACCTCACTTCCCTCACTCCAGAGGTGCATGAAAGGTGTGATGGAATGGTGACCCGCCTGCTTTTCGCCTAGTGTTACcggggataggctctggatccacaaccaccctgaccaggataaaacagttatggaaaataaatgaatcttgaagatacagtatatgtatatttctgctaattatttttatcatttagtaaaaaaaaatatatagttgtACAATGTTTGCACCAGATGAAAACATATCTTTAAGTGGATGTGAAAATGTTGGGCACTGAACAACAACTGATGTGCTTGGGTGTTTGTGCTTCATCCTTGTGGTAGTGCTGTGTGAGAGAACATCAGTGCTTCATTTTGAACACCCAAACATTGACCATAGGTTGATTGATGGGCCCCTCTCTCTGAACAACTGGTTAAACAGAAAGCAGGTTGGATAGATACGTAGCAACAGTTTTATTTTGATAATTgaattacaaaaattaattaaccTGGATTGTCATAGTCAGTGCTTTGTTTGCTTCATGAATGATTGACAAATGATCCTCATATTACTGGACCTTAGTGCCACTTTTGACACTGTGGACCACAATCTGCTTATTGGTTGTCTAAAACAGTGGGTGGTTTAACAGAGAGTGGCTCTTAAATGGTTTACCTCCTACAGCATAGGATATCCTCTGTGAATGTCAGTGATTTGGAGTTCCACAAGGTTCCATCCTTCATCTAATGAGGGAACTTCAGCCAGAAGCataatatttactttaattgCTATGCAGAAAACATACAGCTTTATGTCTTCCCCTGAAACCACGTGAAAGCTGCTCCTTAATGTCTCTCATTAATTGCCTTATAAGGATATTAAGTGTTGGATGGCATCCAGTTTCCTGGCAAGTCAGAAGATAGTATATTATTTGATCCTCCCATGTCACACTAACAGTCTTTTTAAGAATCTTGATCAATATCTGTTAAATTTTATGTCAAAATCCTTTGTGTTTGATTTGATTCAGACCCAAACATAGTCTGatacatttgttgttgttgttgttgttgttttttgttgctgtgtgtttgtgttaatttacCATTTTATGTATTCAAATTCTTATTTGATTTCTTGTACCATTTTACTCAATGTTCAGCACTTTGGTCTACACaggttgttttaaatgtgctttttaaataaattgtacttATTATTAGATGTCACATTGGATggcacaaatatttaaaaagaaagctcCTGCTTGGTAAGTGAAAGAGACTAATGTTGTCATCCCTATATTATGTAATGTTTCATGGAAGCAGTTTGATATTTTCCTGATGGTACAGCTGAAGTAGTAAAACATGTGACACACTAA

Function

NR:

description
uncharacterized protein LOC111669017

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921387.2 False 2090 mRNA 0.42 4 12401465 12406721
XM_026921388.2 True 2877 mRNA 0.42 3 12401465 12406721

Neighbor

gene id symbol gene type direction distance location
ube2t ube2t coding downstream 717 12395444 ~ 12400748 (-)
commd7 commd7,LOC107671961,LOC107603136,LOC107747977,LOC107719919 coding downstream 85113 12306153 ~ 12316352 (-)
nol4lb nol4l,nol4lb,LOC107563666,LOC107672011 coding downstream 115895 12187794 ~ 12285570 (-)
zgc:194282 srms,LOC108276248,LOC108435233,LOC107657057,LOC107747981,LOC107672012,LOC107560891 coding downstream 215687 12168527 ~ 12185778 (-)
trnae-cuc_33 NA coding downstream 260292 12141102 ~ 12141173 (-)
LOC113530803 LOC108276244 coding upstream 5353 12412074 ~ 12415966 (-)
LOC113530362 NA coding upstream 15926 12422647 ~ 12430495 (-)
snphb snph coding upstream 78449 12485170 ~ 12505963 (-)
ntsr1 ntsr1,LOC107559468,LOC107747990,LOC107707740,LOC107671946,LOC107603109 coding upstream 138952 12545673 ~ 12572508 (-)
slco4a1 slco4a1 coding upstream 208303 12615024 ~ 12654821 (-)
G253843 NA non-coding downstream 7812 12392363 ~ 12393653 (-)
G253749 NA non-coding downstream 183721 12217424 ~ 12217744 (-)
LOC113530483 NA non-coding downstream 250520 12143633 ~ 12150945 (-)
G253538 NA non-coding downstream 496779 11904277 ~ 11904686 (-)
G253509 NA non-coding downstream 623532 11777718 ~ 11777933 (-)
LOC113530910 NA non-coding upstream 199820 12606541 ~ 12607682 (-)
G253977 NA non-coding upstream 254523 12661244 ~ 12709317 (-)
LOC117599211 NA non-coding upstream 285624 12692345 ~ 12714080 (-)
G254052 NA non-coding upstream 401659 12808380 ~ 12808599 (-)
G254101 NA non-coding upstream 516998 12923719 ~ 12924012 (-)
ptk6b LOC108276246 other downstream 233670 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 542119 11838796 ~ 11859346 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other downstream 832862 11549394 ~ 11568603 (-)
LOC113530309 NA other downstream 938759 11456020 ~ 11462706 (-)
abhd6b LOC108275644,LOC108436291 other downstream 1376456 11020531 ~ 11025009 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 490753 12897474 ~ 12934308 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other upstream 844419 13251140 ~ 13283885 (-)
LOC113530423 LOC108276099 other upstream 1722242 14128963 ~ 14150581 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 2292551 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 2851764 15258485 ~ 15317365 (-)

Expression


Co-expression Network