cfi (cfi)


Basic Information

Item Value
gene id cfi
gene name cfi
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24734614 ~ 24745225 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921395.2
TCAGCTGGATaaaggacagagagaagacgacagagaggagagatagAAGGATATAGAAGGATATAGAGATAGAATGATGAGGATTACACTcgttcttcttctctctgtcctcctgcTGCAGCTCGGGTGCACAgagcgACAGCCGAAGTTCACAGACGACGTGCCCAGTCAAGATGCCGTGACTGAACAACATGCCAAGGTTCACCTGGAACAGGTAGTAGAAGACCCACCGgtgccTGATCTTCCAAACACACATCGTGAGGTACAGGTAGAACCAGAGGAGGATTCTGCCCATGAAAGCAGACGCCCATTGGAGCCGAAACCTGAATTAAaccctccacctccacctcctcgcCGTAAAGACCCGCCCCCCAAACTGCTGtcagaggagtgtgtgtctgagaaacACACTCGCTCGTCCTGCGCTAAAGTGTTCTGCCTGCCGTGGCAGCGCTGCATCAacggtcagtgtgtgtgtaaactgccCTATCAGTGTCCACGGTTCGGACCCGCGGTGTGTGGACTGGACGGGAGGAGATTCCTGTCTCTGTGCCAGGCTCAGGCCATCGCCTGCCGAGACAAAAAACCCATGTTCTCTCACTACTTACAGCTCGGAGAGTGTGCGGAGGACTCTTTTAAAGTGGAGTTGCGGGAGCTGAAGGGTCAGAAGGTGGTTCAGGTGAGCACAGTTAAAAAGACATTTCTGATCTGTGGTTCGGACTCGTGGAACATGGCAGCCGCTAACGTCGTCTGCAGACACACCGAAAAGGAccccagaGGAGCGCTGGCGTTGAGGACGAGCGAGTTTAAGGACCTGGTGGAAGGGCGTGGCTTGACCAAAGTGCAcaagtgtatgagtgtgaggtGTACGGGGGCGGAGCATACCCTGGCCGAGTGTGTACTCTACAAACCTCGCCTCATCAGTGACAACACGTCTGTTGCTACGGTAACATGCTACACGAAACAACAAGCACAGGAAGAGTGTGACAAGTTCCGCTGTGTGAATGAGAAGTGTGTGTCACTGGAACACGTCTGTGACGGAGTGGACGACTGCGGCGACAACAGCGATGAAATGTGCTGCACAGgtTGCCAAAAGGGTGCTTTCTACTGTAAAACGGGAGTGTGTCTTCCACGCTACGCCGTCGGAGATCAGATACGCGATTGTTTAGGAGGCGAAGACGAACACGAAACGTCGACACATGTCAGTGAGGTTCTTCCTAGATCAGATTCACAAACGGGACGGTTACTGCAAGAAGCAGTACAGAAAGTGGTGAAACCTGAAAAAGagaTCTGGTCGAATCCTACAGAAGatattCATAAAGCACGCAATCACACAGAGACCCTGGAGTGTGGAATTCCCAACTTAGACTACATTCATAAGACGGAGGAAGAGACACAATACAGACGCACTAAACGCGTGGTGGGGGGCGAGGAAGCTCTGCCGACTCAGATACAGTGGCAGGTGGCCGTGCAGGAAGACGGAAAAATCCACTGCGGCGGCGCTTACCTGGGCGGGTGCTGGGTTCTGACCGCCGCCCACTGTGTCAGgcagaAGCCCCAGGCGTTCCGGATTAAATTCTCTCTGTGGAAGAAGCTGTCTCTGCTGAGCACCACCGACAGCGTCCCTGTGAAGAACATCATCATTCACCGCGAGTACAACCCGCGCACCTATCAGAACGACATCGCGCTCATCCAGCTGGAGGAACTGGCCCATCAGAAGGAGTGTCTAACCCCGAACCCGGCCGTGCGGCCCGTCTGTGTCCCCTGGTCAACGGAGCAGTTTCCTCCCGGCCACACCTGCACCATCTCCGGCTGGGGACGCAACAAACAGGGAGACAGTGTGAACATACTGAAGTGGGCCAACGTGAGTCTCATCCCTTACTGCAGGTCCTACTACAAGGAACGCTTCTTCGATGGAATGATGTGTGCAGGTGATCTGGAGGGGAATGTGGACTCGTGCCAGGGCGACTCCGGAGGCCCGTTAGTGTGTAAGGATGCGAGCGGCGTGTCGTACGTGTGGGGAGTCGTGAGCTGGGGAGAAAAGTGCGGAGAAGCCGGCTACCCCGGAGTGTACACTAAAGTGGCTCACTACTTCGAGTGGATTCGGCAGCACACCGGCTGGCAAGCAGTCACCAAGTACAATCAGTGAATTCTCGCTAATAACGCTAATAACGTAGATGAAATTGACATGGATTCGGTATTTTAAAGTAAACGCCTTGTTTTCTTTAGAATTCTTGCTACACTTACAGCAACGTTATGTTGGTATAAAATTGAAACAGATGGCCGTACGACATGACGGCTGATTCCTTCAATATTTCATGTCATGCTTCTCATTAAAAGTCTTACAAACCAA

Function

symbol description
cfi Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Acts upstream of or within retinal blood vessel morphogenesis. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Kuhnt-Junius degeneration; age related macular degeneration 13; atypical hemolytic-uremic syndrome; complement factor I deficiency; and macular degeneration. Orthologous to human CFI (complement factor I).

GO:

id name namespace
GO:0061304 retinal blood vessel morphogenesis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01333 CFI; complement factor I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921395.2 True 2353 mRNA 0.53 18 24734614 24745225

Neighbor

gene id symbol gene type direction distance location
LOC113530848 NA coding downstream 29285 24702380 ~ 24705329 (-)
LOC113530806 LOC108275724,LOC105922125 coding downstream 88881 24638291 ~ 24645733 (-)
prelid1b LOC108275727,LOC108413730 coding downstream 136955 24592873 ~ 24597659 (-)
LOC113530539 plekhg1,LOC108275720 coding downstream 150051 24537485 ~ 24584563 (-)
tcp1 tcp1 coding downstream 198540 24528290 ~ 24536074 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding upstream 658 24745883 ~ 24765073 (-)
LOC113530888 LOC108275606,LOC107568964 coding upstream 26035 24771260 ~ 24774653 (-)
LOC117599302 NA coding upstream 29861 24775086 ~ 24782044 (-)
si:ch73-106g13.1 LOC108275824 coding upstream 83307 24828532 ~ 24836728 (-)
tec tec coding upstream 91607 24836832 ~ 24851867 (-)
G260897 NA non-coding downstream 4071 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 6245 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 9237 24724222 ~ 24725377 (-)
G260873 NA non-coding downstream 33571 24681825 ~ 24701043 (-)
G260871 NA non-coding downstream 36190 24697969 ~ 24698424 (-)
G260921 NA non-coding upstream 98802 24844027 ~ 24864890 (-)
G260942 NA non-coding upstream 125489 24870714 ~ 24873747 (-)
G260962 NA non-coding upstream 229490 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 298223 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 327486 25072711 ~ 25073088 (-)
tent5ab LOC108275717 other downstream 226146 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 348359 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 418199 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 754919 23973365 ~ 23979695 (-)
G260310 NA other downstream 970451 23763674 ~ 23764163 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 42465 24787690 ~ 24795423 (-)
G260947 NA other upstream 135733 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 215796 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 238754 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 295566 25040791 ~ 25042595 (-)

Expression


Co-expression Network