LOC113530973


Basic Information

Item Value
gene id LOC113530973
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23488510 ~ 23494390 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921419.2
CCAAAAATATACTTGACAACTgtatgtttttggtttgttttgaaaATTAGATATATTTAAACTCTCTAAATAGGATAAAATGGAATAAAGGATTGATTACAACGACTGTTTTTTTGCTGTGCTGCTCGGATCATTAAAAGTGAAGGTGAAGTTTGGACAGAAGTTTTGGAATTACATTGAAACTAAACACAGTGGCTGTTTGAGGAAATGGCTGCAACAAGCCATCTTTCGGAAGAAGAATTTTTATGTCCTGTTTGCTATGACATTTTCAGCAATCCTGTTCTACTCTCATGTAGCCATAGCCTGTGTAAAGCATGTCTGCAGCGGCTCTGGGAAATCAAAGAATCTCCAGAATGTCCAGTCTGTAGGAGAAAATCCTCTAAGCCTGAGCCTCCTCTGAACCTGGCGCTAAAGAAGCTGTGTGAATCGTTCTTACAGAGCCGCCATCACAGATCTTCAGTGCCGTCCGACGGCCTCTGCAAGCTGCACAATGAGAAACTCAAACTCTTCTGTCTGGAAGATcagcagcctgtgtgtgtggtgtgtcagACCTCAAAGAGACACAAAAATCATGAGTTCTGCCCTATAGATGAAGTTCTGTATGACATTAAGGAAGGACTCAGGGCTGCCTTGGATCCTCTACAAAAGAGTCAGACACACTTGGAAACTGCTAAACAAAATTAcaacagagcagctttacacatTAAGAGTCAAGCCCAGTGCATGGAAAGACAGATAAAGAAGGAGTTTGAGAAGCTTCATCAGTTTCtaagagaagaagaagcagcaagGATAGCTGCACTAAAGCAAGAAGAGGAGCAAAAGAGTCAGAGGATACAGAGGAAGATTGACGAGACGAATCGTGAAATAGCCCGTCTTCAAGACATaatcagaaaaacagagaaggaAATGGACACTGGGGATGTAGCATTCTTACAGAATGTCGAGTCCACAGTGAAAGAAGTTCAACGGACAACAAAGATTCCAGAGACTGAGACAAATATGCTGATCAATGTTTCTAAACACATTTCTAACCTGAAGATCAGAGTCTGTGTGAGAATGCAGGAGATCTTCCAATacaCTTCTGTTACTCTGGACCCCAACACTGCACATTCACAGCTCCATGTGTCTGACGATCTCACTACTGTTGAACACAGAAAACAGGAATTACCGCTGCCTGATAATCCGGAGCGATTCGATAGTGTTACATGTGTCCTGGGCTGTGAGGGCTTTAAATCAGGGTCGCACTACTGGGACGTCGAGGTTGGGGACAGTAACATCtgggaactgggtgtgattggAGAGTCTGCTCCAAGAAAGAAGAATTCCTTCTCTAATGCAGTGTGCAGCATGAGCTACAATAAAGGAAGTTACCACACGCTCTGTCCGGGACAAACAGGTGACATTTTCAGAGCTAAAGACAAACCGCAGAGGGTCAGAGTGCATCTGGACTGGAACAAGGGGAAAGTGACATTTATTGATCTTATAACCAATACACGCTtgcacactataacacacaatTTTACTGAGAGAGTGTTtccatttttctataacagctctcCATCTCGGCCTATGAAGATCTTACcaataaaacagacagcagaAGTAAAACCCTACATTTAATACCAAAGAACAGAAACATCATTGGAATCTCTGAAACCTCCAACAACAAAAATTAATCTTTAACTCATCTTTAAAAGCATTAGCGTGTGCTATTCTGTATCATTTCACTTGTTCAGTATAGAGTTTGGCCATGGCCAGTGTAAAtacaccacaatgctgttcaattctcaattctgattggtcaggactTGATTaaagtttctataacagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921419.2 True 1835 mRNA 0.42 6 23488510 23494390

Neighbor

gene id symbol gene type direction distance location
LOC113530553 NA coding upstream 1986 23483725 ~ 23486524 (+)
LOC113530554 NA coding upstream 7740 23477194 ~ 23480770 (+)
LOC113530412 NA coding upstream 24904 23460595 ~ 23463606 (+)
LOC113530919 NA coding upstream 37798 23447629 ~ 23450712 (+)
LOC113530555 NA coding upstream 44885 23440496 ~ 23443625 (+)
LOC117599230 NA coding downstream 10801 23505191 ~ 23506978 (+)
LOC113530383 NA coding downstream 13149 23507539 ~ 23509653 (+)
slc10a7 slc10a7,LOC107725722,LOC107752196,LOC107694411 coding downstream 16213 23510603 ~ 23521815 (+)
otud4 otud4 coding downstream 36104 23530494 ~ 23546073 (+)
anapc10 anapc10,LOC107550153,LOC107564421 coding downstream 69155 23563545 ~ 23568673 (+)
G260011 NA non-coding upstream 14066 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 19453 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 126220 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 139573 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 179918 23307755 ~ 23308592 (+)
G260074 NA non-coding downstream 33038 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 60206 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 332502 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 367252 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 373261 23867651 ~ 23869556 (+)
G259993 NA other upstream 99196 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 104857 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 807968 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1946083 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2249511 21228320 ~ 21238999 (+)
G260415 NA other downstream 537837 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 774187 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 906194 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1130547 24624937 ~ 24636129 (+)

Expression


Co-expression Network