iffo2a (iffo2)


Basic Information

Item Value
gene id iffo2a
gene name iffo2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10065107 ~ 10091153 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921428.2
GGTAGCTAACCTCTCAGCTCTCTGGAGACTCGGCGGCTTTTAGCTCACTGCTGACTTCCGGCTTTGTGACTCCACTGATTTttgaattctttaaaatttatttgagACACGCAAATCTACTTAGCTGCTCCCCCCCACAGGCTGTGtgtgaagaatgtgtgtgtatgagtgtgtgtatgtgtgtgtgagggtgtgtagcctcctcctcctgccatttCCCGTTTGGAGGAGCTTATCTTAGCCGCTCGGAATGGGAGTCTCAGTAGCGAGAGGTTTTCCAGGAGCACATAACTGGCGTTACTCTTCACCGAGCAAACGGAGAAAGTGATGTAACAGCTCTGTTAGCCGTTCAACGCTCTTAGGTGGCTTGTATTTCACCAGGGGAAAGAGTAGGCtatgtctttttatttgtatgaCATTAGATAAAGGGAATAAAGGGAAGGGATAGGGATAGGGAGTGCACCTTGCGCTTCTGAACACAGCTATGAGATGACGCGAGTGGCTTTGTTTGAATGAACCACTTCCAGTCCAGGATGGATGACTTCCCTCATCTTTTTCCAGACCAAAACCCTCCAGTTCACATGGAAACGCCGTTACCTCGTATTATCGGTGCCTCTGTGGCGACAGGAGCCGGCTCAGGGGTGAGCAGCGCCTTACGGAATGATTTAGGCTCCaatattcatgttttaaaaacgCTGAATCTCCGCTTCCGCTGCTTCCTCGCCAAAGTGCATGAGCTGGAGCGCAGGAACAAAGTGCTAGAGACTCAGCTGCAGCAGGCTCTGGAGGAGTCCCGCTACAGAAGCTTCTTAAGCCGGGAGCAAGCTATCCAAACCGACTACGAGCTCCCGTTTGCAGGCCCGCTAGCCGAGGCGAGGGTCCCCGGCAGAATCTGGAGCTACTCCCACAGCAGGAGGTATGGAGGCCGGCTGGAGCTGCATCACGGGCCCGGGGTTTCATGGACGCACCCAGATGGAGTCGGAGTCCAGATCGACACCATCACCCCTGAGCTGAGGGCCATCTACAACGTGTTAGCCAAAGTGAAGCGAGAGAGGGACGAATACAGAAGGAGATGGGAGGAGGAGTCGTCCAAGTGCCAGCAAATGGAGGCCATGGTGGAGACTTTACAACAAAGTGCGCAGGAGTCTGAGGACCTACGGAGAGAACTGAGTGAGAAAGTGGAACAGCTTAAAGCTGATTTGATCGTCTATAAGAGTCTCATGACCGatCAAATGTCAGATTTGGACTCCAAAATTCAAGAGAAAGCCATGAAGGTGGACATGGACATTTGTAGACGCATCGATATCACAGCTAAGCTGTGCGACGTGGCCCAGCAGAGGAACTCAGAAGACATGAGCAAGATGTTTCATGTCAGTCCTTCTAGAGCTCCTGCAGACCACAAAGGGgtgTCTGCAGCATGTAAAAAGAAGGAGCGTAAGGCTGTGTCTGATGAGGAGAATGCTGAGGTGGAGGCAGACAGCGAGCACTCTGAGAAGGAGGTTTCTGGATCTCTGAACATTACAGATGAAATGAAGCGCATGCTCAGTCAGCTAATTAGCTCAGATAACTGCTCTGTCGCCAGGAGGGAGACGTTCGAGTTTGATGATGACTGTGACAGTCTGGCCTGGGAGGAGACCGAAGAGACTCTGCTCCTGTGGGAGGACTTTACCAACAGCCCTGTTATTTCCACCTCCACcactcctgctcctgctgctgccgGTTCACACTCTAGCGCTGCCTGTGCTGCCGAATGCCACGGAGAAACACACGAGCAGGATGGAAGTCTGCGCAGTCTGATAAACGAGACCGAGTCACTCTTTAAAACTAGAGAGCAGGAGTACCATGCAACAATCGGACAGATCGAGCTGGAGTTGGCCACAGCCAAGAGTGACATGACCAGACACCTGCACGAGTACATGGAGATGTGCAGTATGAAGCGAGGACTGGATGTGCAGATGGAGACCTGTCGCAGACTCATCCAGAGCTCAGCAACCACTGGCAGAAACTCACCATTCTTTAACTCTGGAGCAAGCAGTGACTCAGGAAATGCAGAAGACCTACAAGATGAGCTAGACAGGGAtggagagaaggacagagacatCGTTGGAAAGAGCgatggagagacagatgtaTATGGGGAGGTCAGTTGATGACCCTCCACATCACATCCCTCTTCTTCCACAGTGGCACAGGGGGTAGAAACTCTGACCCAGTCTTCCGTGATATGCGGCTCTGTGGATCTCAGAGTCGGTAGTACGTGTGCTGTCCCAAATTGGGATGAAATCAGTTTTACAGAGTCTGTCTCCTGAAACTGTCTTTTTAATCAGCACTGCCAAGGCATGGCTCCATCTTCTCCTGTCCTCTATCACACTGGCttgtaaaatctacagtatacaCAATGTCTTTCaacattctttcctttttttatagTCTGCTTCAGAGGTAATCATGAAATCCAATTATCAGTTTTTATTCATCGTATTACAGCAAAATAGATTTGTTGGTCATTTGTTAGTCATAAAGGAGCCTAGAATCAACATTAACAATAGCATTTGTTCTGACTCTTGTCACCTGATCAATGGAAATActgtgttttatacattttagagGAATCATTgctctgaaatctgaaatattgCAGATAATCACATAGACACACCATATAAGCCATGCAGTAGGAGCTTCTACACTAAGGTTAGACAACATTGCACAGTTGTGCACAGAGCACTATGCAATAAGCTGCTTTGGAAATGCagtttaactgttttttttttttttttttacagggacATTCTTGATATTTGTGAAAAAGTGCCCTGCTCTTATTTTACCTTTAATGCAGAAGTTTCAGTGTTCAGAGAAAGCTGATGCCAAACAGTAGAAATCCAAAACCCTTGTGCCTGCAGCGATGTTTTATACAGTACCAGTTGccttattagatttttttttttttagctgtgcttttaaaattatttcaaaactGATCAAAGTCAATAGCAGATAGAAGAAAACATTgtgaaatgtacaaaaacatcAAACAACAATACACCTGTTGGTCATCCGTGAAgtaaaaatgtgattattagtattattaatattactattgtCATTACTGTTGTTGGTTTTTGGAATTTTTCTGCGTGGATATTTTCTGTATCTTTATAAAGGTCTTGTTTAGAGTTTGCTATAATTATCATGCTGAATTATGTGGAGACTTAATCactgatctttttttaatttatggaaAAGAGTTATTCCTTATGTTTTATCCTCTGCTTAACGGACacttaataaatcattatttatacaca
>XM_026921430.2
AGCTAACCTCTCAGCTCTCTGGAGACTCGGCGGCTTTTAGCTCACTGCTGACTTCCGGCTTTGTGACTCCACTGATTTttgaattctttaaaatttatttgagACACGCAAATCTACTTAGCTGCTCCCCCCCACAGGCTGTGtgtgaagaatgtgtgtgtatgagtgtgtgtatgtgtgtgtgagggtgtgtagcctcctcctcctgccatttCCCGTTTGGAGGAGCTTATCTTAGCCGCTCGGAATGGGAGTCTCAGTAGCGAGAGGTTTTCCAGGAGCACATAACTGGCGTTACTCTTCACCGAGCAAACGGAGAAAGTGATGTAACAGCTCTGTTAGCCGTTCAACGCTCTTAGGTGGCTTGTATTTCACCAGGGGAAAGAGTAGGCtatgtctttttatttgtatgaCATTAGATAAAGGGAATAAAGGGAAGGGATAGGGATAGGGAGTGCACCTTGCGCTTCTGAACACAGCTATGAGATGACGCGAGTGGCTTTGTTTGAATGAACCACTTCCAGTCCAGGATGGATGACTTCCCTCATCTTTTTCCAGACCAAAACCCTCCAGTTCACATGGAAACGCCGTTACCTCGTATTATCGGTGCCTCTGTGGCGACAGGAGCCGGCTCAGGGGTGAGCAGCGCCTTACGGAATGATTTAGGCTCCaatattcatgttttaaaaacgCTGAATCTCCGCTTCCGCTGCTTCCTCGCCAAAGTGCATGAGCTGGAGCGCAGGAACAAAGTGCTAGAGACTCAGCTGCAGCAGGCTCTGGAGGAGTCCCGCTACAGAAGCTTCTTAAGCCGGGAGCAAGCTATCCAAACCGACTACGAGCTCCCGTTTGCAGGCCCGCTAGCCGAGGCGAGGGTCCCCGGCAGAATCTGGAGCTACTCCCACAGCAGGAGGTATGGAGGCCGGCTGGAGCTGCATCACGGGCCCGGGGTTTCATGGACGCACCCAGATGGAGTCGGAGTCCAGATCGACACCATCACCCCTGAGCTGAGGGCCATCTACAACGTGTTAGCCAAAGTGAAGCGAGAGAGGGACGAATACAGAAGGAGATGGGAGGAGGAGTCGTCCAAGTGCCAGCAAATGGAGGCCATGGTGGAGACTTTACAACAAAGTGCGCAGGAGTCTGAGGACCTACGGAGAGAACTGAGTGAGAAAGTGGAACAGCTTAAAGCTGATTTGATCGTCTATAAGAGTCTCATGACCGatCAAATGTCAGATTTGGACTCCAAAATTCAAGAGAAAGCCATGAAGGTGGACATGGACATTTGTAGACGCATCGATATCACAGCTAAGCTGTGCGACGTGGCCCAGCAGAGGAACTCAGAAGACATGAGCAAGATGTTTCATGTCAGTCCTTCTAGAGCTCCTGCAGACCACAAAGGGgtgTCTGCAGCATGTAAAAAGAAGGAGCGTAAGGCTGTGTCTGATGAGGAGAATGCTGAGGTGGAGGCAGACAGCGAGCACTCTGAGAAGGAGGTTTCTGGATCTCTGAACATTACAGATGAAATGAAGCGCATGCTCAGTCAGCTGAGGGAGACGTTCGAGTTTGATGATGACTGTGACAGTCTGGCCTGGGAGGAGACCGAAGAGACTCTGCTCCTGTGGGAGGACTTTACCAACAGCCCTGTTATTTCCACCTCCACcactcctgctcctgctgctgccgGTTCACACTCTAGCGCTGCCTGTGCTGCCGAATGCCACGGAGAAACACACGAGCAGGATGGAAGTCTGCGCAGTCTGATAAACGAGACCGAGTCACTCTTTAAAACTAGAGAGCAGGAGTACCATGCAACAATCGGACAGATCGAGCTGGAGTTGGCCACAGCCAAGAGTGACATGACCAGACACCTGCACGAGTACATGGAGATGTGCAGTATGAAGCGAGGACTGGATGTGCAGATGGAGACCTGTCGCAGACTCATCCAGAGCTCAGCAACCACTGGCAGAAACTCACCATTCTTTAACTCTGGAGCAAGCAGTGACTCAGGAAATGCAGAAGACCTACAAGATGAGCTAGACAGGGAtggagagaaggacagagacatCGTTGGAAAGAGCgatggagagacagatgtaTATGGGGAGGTCAGTTGATGACCCTCCACATCACATCCCTCTTCTTCCACAGTGGCACAGGGGGTAGAAACTCTGACCCAGTCTTCCGTGATATGCGGCTCTGTGGATCTCAGAGTCGGTAGTACGTGTGCTGTCCCAAATTGGGATGAAATCAGTTTTACAGAGTCTGTCTCCTGAAACTGTCTTTTTAATCAGCACTGCCAAGGCATGGCTCCATCTTCTCCTGTCCTCTATCACACTGGCttgtaaaatctacagtatacaCAATGTCTTTCaacattctttcctttttttatagTCTGCTTCAGAGGTAATCATGAAATCCAATTATCAGTTTTTATTCATCGTATTACAGCAAAATAGATTTGTTGGTCATTTGTTAGTCATAAAGGAGCCTAGAATCAACATTAACAATAGCATTTGTTCTGACTCTTGTCACCTGATCAATGGAAATActgtgttttatacattttagagGAATCATTgctctgaaatctgaaatattgCAGATAATCACATAGACACACCATATAAGCCATGCAGTAGGAGCTTCTACACTAAGGTTAGACAACATTGCACAGTTGTGCACAGAGCACTATGCAATAAGCTGCTTTGGAAATGCagtttaactgttttttttttttttttttacagggacATTCTTGATATTTGTGAAAAAGTGCCCTGCTCTTATTTTACCTTTAATGCAGAAGTTTCAGTGTTCAGAGAAAGCTGATGCCAAACAGTAGAAATCCAAAACCCTTGTGCCTGCAGCGATGTTTTATACAGTACCAGTTGccttattagatttttttttttttagctgtgcttttaaaattatttcaaaactGATCAAAGTCAATAGCAGATAGAAGAAAACATTgtgaaatgtacaaaaacatcAAACAACAATACACCTGTTGGTCATCCGTGAAgtaaaaatgtgattattagtattattaatattactattgtCATTACTGTTGTTGGTTTTTGGAATTTTTCTGCGTGGATATTTTCTGTATCTTTATAAAGGTCTTGTTTAGAGTTTGCTATAATTATCATGCTGAATTATGTGGAGACTTAATCactgatctttttttaatttatggaaAAGAGTTATTCCTTATGTTTTATCCTCTGCTTAACGGACacttaataaatcattatttatacaca

Function

symbol description
iffo2 Predicted to be located in intermediate filament.

NR:

description
PREDICTED: intermediate filament family orphan 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921428.2 True 3311 mRNA 0.46 9 10065107 10091153
XM_026921430.2 False 3278 mRNA 0.46 9 10065107 10091150

Neighbor

gene id symbol gene type direction distance location
LOC113530596 LOC108276390 coding downstream 2362 10057524 ~ 10062745 (-)
LOC113530745 LOC108275587,LOC108275676,LOC108275637 coding downstream 14491 10049304 ~ 10050616 (-)
LOC113530854 LOC108275587,LOC108275676,LOC108275637 coding downstream 17742 10046185 ~ 10047365 (-)
LOC113530835 LOC108275587,LOC108275676,LOC108275637 coding downstream 24938 10038719 ~ 10040169 (-)
LOC117599272 LOC108275587,LOC108275676,LOC108275637 coding downstream 29288 10034273 ~ 10035819 (-)
ubr4 ubr4 coding upstream 1579 10092732 ~ 10139291 (-)
emc1 emc1,LOC107593385 coding upstream 49581 10140734 ~ 10152722 (-)
megf6a megf6,LOC108276135 coding upstream 251645 10342798 ~ 10372696 (-)
ttc34 ttc34 coding upstream 312024 10403177 ~ 10411529 (-)
si:ch211-112c15.8 NA coding upstream 321573 10412726 ~ 10420802 (-)
G252479 NA non-coding downstream 9024 10054877 ~ 10056083 (-)
G252331 NA non-coding downstream 144959 9917429 ~ 9920148 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding downstream 169582 9895284 ~ 9895525 (-)
G252265 NA non-coding downstream 215411 9847116 ~ 9849696 (-)
LOC117599281 NA non-coding downstream 356304 9704915 ~ 9708803 (-)
LOC117599207 NA non-coding upstream 88635 10179788 ~ 10181888 (-)
LOC117599279 NA non-coding upstream 152888 10244041 ~ 10288684 (-)
G252610 NA non-coding upstream 305242 10396395 ~ 10396740 (-)
G252783 NA non-coding upstream 564161 10655314 ~ 10655522 (-)
G252833 NA non-coding upstream 619242 10710395 ~ 10711491 (-)
G252373 NA other downstream 35114 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 293544 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1486507 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2555316 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2656850 7399793 ~ 7408257 (-)
usp21 LOC108276040,LOC108432659 other upstream 369541 10460694 ~ 10469796 (-)
sinup NA other upstream 545348 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 918310 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 929378 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 1364867 11456020 ~ 11462706 (-)

Expression


Co-expression Network