sgms2b (LOC108275722)


Basic Information

Item Value
gene id sgms2b
gene name LOC108275722
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24715017 ~ 24725235 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921435.2
atttttttacagtttaattgaGTATTTCTGAGGCATCTGAGGCAAGCACTTGAGATCTCCCTGAGCCACTTCTTTAAGACGCGAGTGGGCGTGGTGTTTAACCGGAAGTAGGCGTGTTTTTGAGCCCCAGGTGGGCGTTAGCGACAGGTGAAGGCTTCAGATTCAGATTCGGTCTGTGTGGAGTGGACATGAAAACACTGATCAGCCGCGGAGCAGTAATACACACAGTGCTGTGAGTTTCACTCACCAGATCCAGATCCAGGTTCAGGAGGAGatccagatccagatccagGTTCAGGTGGAGATCCAGATCCAGGTGGAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTGGAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTTCAGgtcACCGTTCACACAGGAAGCAGCAGAAGTTCAGCAGCCGGTGGTTTGTTTCCACTCCTCCGAACAGAttattatccatccattcacaaAACGCAGGGTgatttgggtgtgtgtgtgtaagagagacagtgtgtgtgtgggtgagcgATTACATTAACAATGGCGGTGACCAAGCTTCCTGAATCAGCGCAGCATGAAGGTGAAAATGAGGGCCACATTGAAGTATTAGTTCCAGACACTTCCCCACACCCCCAGactccacccacagaactaaCCCCCAGCATTACAAAAGAGGGCGGAGCTGCAGACCACGCCACGGACCATGCCACGCCCCAGTCTCGTCTGTCACGAGGTTTTGCGCGTTTGTTGCGTAAGAACCAGGACTACATCCGCATCAGCATGGGCGAGCCCCGCCCTGAGCGCCTGCACGCTGAGCGTCTGCCGGCTGAGTGGTGGAAAACGGGCGTGTCCTTCCTGTGGGCGGGGTCTATGCtcttcctcaccactgtcatgATCACGGTGGTGCACGAGCGCGTCCCTGAGAAGGAGAGCAATCCACCGCTGCCCGATAAGTTCTTTGACTATGTGCCGCGTGTGGAGTGGGCGTTTACGGTCACCGAGGTCATCGGTATCGTACTGACGCTCGTCTGGACCACACAGtggctctgtctcaaacacaagtcaaTCATAGGCCGCAGATTCTTCTTCCTGATGGGGATGTTGTATCTATATCGCATCATCACCATGTACATCACCACGCTGCCTGTCCCCAGCACACACATGAACTGTGCTCCCaagtTGTATGATGACTCAGTGGGGAAAGTGTATCGCATCCTGCAGCTCGTCTCAGGAGGAGGTTTGTCCATCACGGGCTCACACATGATGTGTGGTGATTTCCTGTACAGCGGTCACACAGTCATCCTCACACTCACCTACCTCTTCAtcagtgaatACTCCCCCCGCTGGATGTGGTGGTACCACCTGATCTGCTGGTTGCTGAGTTTAGTGGGCGTGGTCTTCATCCTTGTAGCTCATGAGCACTACAGCGTGGACGTGGTGGTGGCGTATTTCGTTACGTCACGCCTCTTCTACTGGTACCACACCATGGCCAACAACCAGTCTCTACGAGATTCTCCTCAGAATTATCTCTCTCGTGTGTGGTGGAGGTTCTTCTTTAACTTCCTGGAGAGGAACGTTCGCTCCGTGGTGCCCTGTAAGTTCTGCTGGCCGTTCACTCTGCCCACCTCCTGCCTTACTACGCCCTGCGACTCGTACTCCAAAGTGCAGACGACCCGAGacgagtgacacacacacacacacacacacacacacacacacacacacacacacacacaggggacaGAACGTTACAGctcaagcgcacacacacagcagtattTTACagactgagagtgtgtgtgtgtgtacctaagTGCTTTAAAGACTCTATatggtgaagaagaagaaaataatttatttttatgaaggatgtttatgttttatgaaTTTGTGACTCAGTCGTTATGAGTTTACTGACATTACTGAAGgactgtttatgtttattgacacgtactgtattttttttaaatttcagtgtgaATATCTTTTGCAATAGTACTGTATGTTCGTTAAAGTTTAATATTGCTTATTTGGCCTGCTGTATGATAATGTAAAAGAATAAACTATTTTTCTATATA
>XM_034312246.1
tttaattgaGTATTTCTGAGGCATCTGAGGCAAGCACTTGAGATCTCCCTGAGCCACTTCTTTAAGACGCGAGTGGGCGTGGTGTTTAACCGGAAGTAGGCGTGTTTTTGAGCCCCAGGTGGGCGTTAGCGACAGGTGAAGGCTTCAGATTCAGATTCGGTCTGTGTGGAGTGGACATGAAAACACTGATCAGCCGCGGAGCAGTAATACACACAGTGCTGTGAGTTTCACTCACCAGATCCAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTGGAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTGGAGATCCAGGTTCAGGTGGAGATCCAGATCCAGGTTCAGgtcACCGTTCACACAGGAAGCAGCAGAAGTTCAGCAGCCGGTGGTTTGTTTCCACTCCTCCGAACAGAttattatccatccattcacaaAACGCAGGGTgatttgggtgtgtgtgtgtaagagagacagtgtgtgtgtgggtgagcgATTACATTAACAATGGCGGTGACCAAGCTTCCTGAATCAGCGCAGCATGAAGGTGAAAATGAGGGCCACATTGAAGTATTAGTTCCAGACACTTCCCCACACCCCCAGactccacccacagaactaaCCCCCAGCATTACAAAAGAGGGCGGAGCTGCAGACCACGCCACGGACCATGCCACGCCCCAGTCTCGTCTGTCACGAGGTTTTGCGCGTTTGTTGCGTAAGAACCAGGACTACATCCGCATCAGCATGGGCGAGCCCCGCCCTGAGCGCCTGCACGCTGAGCGTCTGCCGGCTGAGTGGTGGAAAACGGGCGTGTCCTTCCTGTGGGCGGGGTCTATGCtcttcctcaccactgtcatgATCACGGTGGTGCACGAGCGCGTCCCTGAGAAGGAGAGCAATCCACCGCTGCCCGATAAGTTCTTTGACTATGTGCCGCGTGTGGAGTGGGCGTTTACGGTCACCGAGGTCATCGGTATCGTACTGACGCTCGTCTGGACCACACAGtggctctgtctcaaacacaagtcaaTCATAGGCCGCAGATTCTTCTTCCTGATGGGGATGTTGTATCTATATCGCATCATCACCATGTACATCACCACGCTGCCTGTCCCCAGCACACACATGAACTGTGCTCCCaagtTGTATGATGACTCAGTGGGGAAAGTGTATCGCATCCTGCAGCTCGTCTCAGGAGGAGGTTTGTCCATCACGGGCTCACACATGATGTGTGGTGATTTCCTGTACAGCGGTCACACAGTCATCCTCACACTCACCTACCTCTTCAtcagtgaatACTCCCCCCGCTGGATGTGGTGGTACCACCTGATCTGCTGGTTGCTGAGTTTAGTGGGCGTGGTCTTCATCCTTGTAGCTCATGAGCACTACAGCGTGGACGTGGTGGTGGCGTATTTCGTTACGTCACGCCTCTTCTACTGGTACCACACCATGGCCAACAACCAGTCTCTACGAGATTCTCCTCAGAATTATCTCTCTCGTGTGTGGTGGAGGTTCTTCTTTAACTTCCTGGAGAGGAACGTTCGCTCCGTGGTGCCCTGTAAGTTCTGCTGGCCGTTCACTCTGCCCACCTCCTGCCTTACTACGCCCTGCGACTCGTACTCCAAAGTGCAGACGACCCGAGacgagtgacacacacacacacacacacacacacacacacacacacacacacacacacaggggacaGAACGTTACAGctcaagcgcacacacacagcagtattTTACagactgagagtgtgtgtgtgtgtacctaagTGCTTTAAAGACTCTATatggtgaagaagaagaaaataatttatttttatgaaggatgtttatgttttatgaaTTTGTGACTCAGTCGTTATGAGTTTACTGACATTACTGAAGgactgtttatgtttattgacacgtactgtattttttttaaatttcagtgtgaATATCTTTTGCAATAGTACTGTATGTTCGTTAAAGTTTAATATTGCTTATTTGGCCTGCTGTATGATAATGTAAAAGAATAAACTATTTTTCTATATA

Function

NR:

description
PREDICTED: phosphatidylcholine:ceramide cholinephosphotransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921435.2 True 2091 mRNA 0.50 6 24715017 24725235
XM_034312246.1 False 2049 mRNA 0.50 7 24715029 24725235

Neighbor

gene id symbol gene type direction distance location
aimp1b LOC108275725 coding upstream 16584 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 25122 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 91212 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 101928 24599158 ~ 24613089 (+)
LOC113530532 LOC108275719 coding upstream 186102 24520879 ~ 24528915 (+)
LOC117599303 NA coding downstream 71994 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 76657 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 77936 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 82282 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 131345 24856580 ~ 24868832 (+)
LOC113530849 NA non-coding upstream 8902 24705287 ~ 24706115 (+)
G260677 NA non-coding upstream 97800 24616168 ~ 24617217 (+)
G260623 tcp1 non-coding upstream 110958 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 186102 24523258 ~ 24528915 (+)
G260632 LOC108275555 non-coding upstream 235217 24477566 ~ 24479800 (+)
G260691 NA non-coding downstream 612 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 10488 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 20546 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 43687 24768922 ~ 24771134 (+)
G260705 NA non-coding downstream 49280 24774515 ~ 24775224 (+)
ddx58 ddx58 other upstream 78888 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 261479 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 445750 24268577 ~ 24269267 (+)
G260415 NA other upstream 682293 24032227 ~ 24032724 (+)
G259993 NA other upstream 1325703 23387538 ~ 23389314 (+)

Expression


Co-expression Network