sh3gl2b (sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542)


Basic Information

Item Value
gene id sh3gl2b
gene name sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25056918 ~ 25067948 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311547.1
AGGCTGAGAGTAAGcggagctctctctctctctctctctctctctctctctctgttttctctgcaCTCAGTGAGCAGCTCAGGCAGGTAGAGGACATGTCTGTAGCAGGACTGAAGAAACAGTTCCACAAAGCGACTCAGaaagtgagtgagaaggTCGGGGGAGCAGAAGGCACCAAGCTCGACGATGACTTCAAGGAAATGGAGAAGaaaGTGGACATTACAAGCAGAGCAGTGCTGGACATCATGACCAAAACTACAGAATATCTACAGCCAaacccagcctcCAGAGCGAAGTTAAGTATGATAAACACCATGTCTAAGATCCGCGGGCAGGAGAAAGGGCCGGGCTACCCACAGGCTGAGAGCGTGCTCGGAGACGCCATGCAGAAATTCGGCCGAGAACTCGGAGAGGAATCCAGCTtcggtctgGCTCTGATAGATGCAGGTGAGGCGATGCGTGAGCTCGGAGAGGTGAAGGACGCTCTGGACATGGAGGTCAAACAGAACTTTATTGACCCGCTGCAGAATCTGCATGACAAGGATGTGAAAGAgatacagcaccACCTGAAGAAGATGGAGGGCCGTCGTCTGGATTTTGACTATAAGAAGAAGCGTCAGGGCAAAGTGACAGAAGAGGAGATTAAACAGGCGCTGGAGAAGTTCGACGAGTCAAAGGAGATCGCGGAGCAGAGCATGTTCAACCTGCTGGAGAGCGatatagAGCAGGTGAGCCAGTTGGCTGCACTGGTGAAGGCTCAGCTGGATTACCACCAACAGGCCACTGATATCCTACAGCAGCTCTCCAGCAAGATGGAGGAGAGgATAAAGGAGGCCTCCAGTAAGCCGAGGAAAGAATACATTCCTAAACCGCGCATGGAGCTTCAGCTGCCCAGTGAAACTCACAATGGAGGAATACACACTGCTAAATCACCTGCTCGCTccccagctCCTCTGGATCAGCCGTGTTGTCGCGCTCTGTATGACTTCGAGCCGGAGAATGAGGGCGAGCTGGGCTTTAAGGAAGGTGACATCATCacgctgaccaatcagatcgaTGATAACTGGTATGAGGGGATGATCCACGGCCAGTCGGGTTTCTTCCCCATCAACTACGTCGACATCCTGGTCCCTCTGCCTcattaagccccgccccttgcTATGCTCCACCCACTTCACCACCatttctgatgatgatgatgatgatgaagacgttccagtaaataattaataacacactctgaAGTGTTTGTGTGCCCGTGCAGTGTTGCGTTTAGAGGcggctcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttttcttcCACCGTTGCTTGTTTATTCGTTTATCTGTTGctggtttatttgttttgttttctgatcATTTGTTTATGAATGTTCCAGTTATCActaattatatcacaatattccACACTATTAATGTAGATgaaatatgatatgaatattaataagtgTCTCGTTATATTCACGTCACGTTTCTGCTGTAACACTCAGGTTCCAACTTTCTTCAGTTTTCTTTGTAATTTACGCTGCGGTTTCGTTCAGTGGGCGTGGCTAACATAAGAGTTTGAGATCATTTCTGAAGATCAGTTCGTTTCGTTTCTCAGGATGGCGTCAGGAATAAAAATGACACGAATCGTCTGCGCGAGGTTCTACAGGGTTCCTTTGCTGAGACTCGGATGTTTGCGTGACACACAGCGATATGATCGCTTTATTAATCGTACGCATCTCCACATCATCTTTCTGGACTTCCGTAATCCTGAGTGTGTAAAGACGGCTGTGGATTTAAACGCTGGTTTTAAACTGTTAAGCGTTAAAGATCAAAGTGTAAAGCTATAAAACTCTGAGTTGTTGTTGTCGCACCGTGTTACGCTTTTCGTGAGGCTGAATGCGGAGAAGGCGTCTGGGAGAAACGTGTGACGATGAAACCGTGAGCTCACGAGCTCGTCCATAACCTCTGCAGCTCCGGGTCGTCACGCCCGAGGGCTCCAGTCCTGCAGGTGGCGCTGTTACAGTTTCATAATCACAGGCTTTATTCAAATCTCGACACATCGTCCGTTTACTCCGTAACTACGTCGTGTTGTTGGTGGAACACGGCTGAACATCGTCTCTGTGTGAAGTCCCTGTAGATATTATACAGGCTTTCTGTTGGAGGGCGGAGCTTCACTCTGATTGGTTCCCCTCACATCCAATCAGAACCCTTAAATCGAAACTGCAAGAGACGCAGTGTGTGAAGGCATTTAGGACACGCCCTGTttattctctttcatttctcctgaactttttgtttgttagtttggtTGTTTATTCGATCTTTTTTCCAGCACAATTTAAAAAACTTTCTCATAAAGTCGGAATAATAATCACTGATGAGAAGAGTTCCTGCGATTTACTCTGCAAGTGTTTCTGCCTGAGCtgcagcttttttatttatttatttatttatttatttatttgtttatttgtttgtgcattatatttatttaactgttcTGTAGTTTCAGTTCATGTGGAAGTGACATTCCAATGTATGCAcaactgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctatgagtgtgtgtgtgtgtgtgtgtgtttatcctgTACAGTGTTACACAGAGGAagctgatctctctctctgattggtgGATTTGGTGTTTCCGTATCTGCAGTCGTGTAAAATGAACTTTATGGATTTTTAATGACGTgtttaaagtgtaaaagtgacgattatttgttttttccgCCTTAAAATGTGAGTATTAAATGAAACCGGatgttttttccttattttccctctcatttttgtgtgtgtgtgtatgagcgtgtatgtgagtgtgtgtgtgtatgagtgtgtgtatgtgtatatgagtgtatgatgagtgtgtgt

Function

symbol description
sh3gl2 Enables identical protein binding activity. Involved in negative regulation of blood-brain barrier permeability; negative regulation of gene expression; and negative regulation of protein phosphorylation. Located in perinuclear region of cytoplasm.

NR:

description
PREDICTED: endophilin-A1

GO: NA

KEGG:

id description
K11247 SH3GL; endophilin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311547.1 True 3024 mRNA 0.46 9 25056918 25067948

Neighbor

gene id symbol gene type direction distance location
LOC117599278 anp32b,LOC108275503,LOC108412630 coding downstream 3351 25047620 ~ 25053567 (-)
ctc1 NA coding downstream 15450 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 30828 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 74620 24977894 ~ 24982298 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 96900 24932584 ~ 24960018 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 37760 25105708 ~ 25111538 (-)
G260926 NA non-coding downstream 10625 25043448 ~ 25046293 (-)
G260962 NA non-coding downstream 81611 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 183171 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 192028 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 326375 24730292 ~ 24730543 (-)
G260976 NA non-coding upstream 4763 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 20691 25088639 ~ 25089918 (-)
G260972 ctc1 other downstream 14323 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 48725 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 79851 24961021 ~ 24977067 (-)
G260947 NA other downstream 173773 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 261495 24787690 ~ 24795423 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 8825 25076773 ~ 25079035 (-)

Expression


Co-expression Network