LOC113525390 (ephb4,LOC108276001)


Basic Information

Item Value
gene id LOC113525390
gene name ephb4,LOC108276001
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25105708 ~ 25111538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311593.1
GATGTCATTCGGAGAGCGGCCATATTGGGACATGAGCAACCAggatGTGATCAATGCTATAGAACAAGATTACCGTTTGCCCCGCCCCTCTGATTGTCCTGCCCCCCTGCATCAGCTGATGTTGGATTGTTGGCAGAGAGAGCGTGCGTCCCGCCCCCGATTCTGTGACCTCGTAAACTCTCTTGACAAGCTTATCCGAAACCCCACCTCCCTCaaacacaccactcacacacaagaCGGgtTGTTGCTGGACCggcgtccctctctctctcagtgtgtgtctgtgagcgaGTGGCTGAAAGGTATCAAAATGGAGCGATATGAGGAGAACTTCATTCAGGCCGGGTTCACCACGTTAGAGCTCATCTCTCAGATCAGCACTGaggACCTGCTGCGCATCGGTGTGACCCTGGCTGGTCATCAGAAGAAGATTCTCTCCAGCATCCAGACCATGAGAGTCCAATCCAAAAACTCACTGAGATACTGAACACACGACGGAAAAGTTTCCTTCCCATGATCCTTTGCACTTCGAGACCACTACACATGACGGCCAATCACAGTGTCTCCACAAGGGATGAAATCATCAATCACATCCACCAATCACATCTCACTGTATTTGTAGATGTCGTAGTGCCTGCTCCTTGTCCATCTTTCCGTCGTGCCTGATTACATCACACACCGTTCATTTCAGTGTCCAATCAGAGCTCAGCGTTTTTACAAAACGAACTATGATGTCACTACACACCACCGTGCCTCATAGCCCAATCAGTGTCCGGTGTTCGATGGTGTCTTCGCCTGATTGGCTGAGTTTGCACTCGGGTTTTGAGGAGAGACAGACGCCTTCCCATAATGCTTTGCACTTCAAGCCCAGTACACATGACGcacaacagccaatcagagtacATCCATGAGGAATGACATCACACTACGAAACTTCATGACTTTAAGGAATTATGACGCAGTTCTGTGGTGTTTAACTCTGACTGGATAATCCAACACTCTGGAATCACCCAATCACATCCCATCATTCCttgcacttcctgtttcaggtgACACTCAGTCAAAGTGTCTCTGTGAGGGATGACATCACATCGTTAAACTGTGACATCGTTATGACATCACAGTGCCTAGCAGACCTATCACTGTGTGCTGTTCCAATGTGCCTGAAGATGATTGGCTAATCCTGTGCTTTAATTACATTTGAGAAAAGACTTAGTGGGatgtacagttttaaaaatgaagttGTGGTTGCCTTGACAGCAGTTGCCATGGTAATATTGTTGCTATGGACACCTTCAGGACATCACAGCTCTTTTCCCTTTCCCTGATGCTTTGGACCAATCAGGGTGCAGGCAGCAGGAATGAGGTGACCAAGAGCCTTTCAGCCTTGAACTTTGGCCTTAAATGTTGCCACGGAAACATGCTGCCACTTTGCATTCTGGGAGTTTTAACAATGGAACCTTCATATTGAAGGTTTGTTATATTTGAATGAGCCGATGATTATTTtgtatgaatttttttcttatgaaataaatgattgaataaaa

Function

symbol description
ephb4 Enables ephrin receptor activity. Involved in several processes, including cell migration involved in sprouting angiogenesis; ephrin receptor signaling pathway; and protein autophosphorylation. Is integral component of plasma membrane. Implicated in hereditary lymphedema.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311593.1 True 1547 mRNA 0.47 4 25105708 25111538

Neighbor

gene id symbol gene type direction distance location
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding downstream 37760 25056918 ~ 25067948 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding downstream 52141 25047620 ~ 25053567 (-)
ctc1 NA coding downstream 64240 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 79618 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 123410 24977894 ~ 24982298 (-)
G260979 NA non-coding downstream 15790 25088639 ~ 25089918 (-)
G260976 NA non-coding downstream 32620 25072711 ~ 25073088 (-)
G260926 NA non-coding downstream 59415 25043448 ~ 25046293 (-)
G260962 NA non-coding downstream 130401 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 231961 24870714 ~ 24873747 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other downstream 26673 25076773 ~ 25079035 (-)
G260972 ctc1 other downstream 63113 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 97515 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 128641 24961021 ~ 24977067 (-)
G260947 NA other downstream 222563 24880958 ~ 24883145 (-)

Expression


Co-expression Network