si:ch211-210c8.6


Basic Information

Item Value
gene id si:ch211-210c8.6
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 16787801 ~ 16838649 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311602.1
TAAAACTCTTATCTTTCCCAGTCATAACTGTGAAATTTCCACACAGATGTGATTCACTGCTGTCTATACAGCACAAGTACAAGACTACATGGAGTGTGAAGTGGAGCTGTTCATAGAGGACGTTCATAGCGCATGCGCATACAGGCACGCCTCTGTTCAAGGATGGTCTAAAAGAACTTCAGGATGATAATATATGCTAAACACAGAACTTATCGGTAATACAGAACATTAATATCCATGGACGGATCACTAGCAGAGTGCACTGTAATTGATGTAGCTGTTCAATGGGCCGGGTGGACTATCGCGTCAGCTCTAAAAACGGAAAAGTTTTACAATTTGGCAGACCCGGGACATTTCTCTTCCACTGGATCATGAAAGAAGGACAAGACCACAGATTCAGCAATGTCAGAAATCGCCCTGGGATATTCTTTGTGTACTGGACCCTGCAAGgGCCTTATCTCTGTGCTGTGATATTGCTGTACACCACTGTACTCTGGGTACTACTGTGTCTCCAACGGAAGAGCAGTCCTAGGCCGCTCATCTGAAcaacataaaatatgaaatctaGCAAGTGGGTGGACAGGAGCAAGTCACGAGGATGTGGACTGGCTTTCCCTCTGCTGCAGACACAACAACCTGGAGCTAAACACCGGCAAGACAGTGGAGATGACAGTGGACTTTAAAAAAGACCCTACTCCTCTGCCTCCACTCACGATCCACAGTTGTATTGTGTCCAGCACTGAATCCTTCTAGTTCCTTGGCACCAACATCTGCAAGGACTTGATGTGGGAGACGAACATTGCTGCCATCACCAAGAAAGCACAGCAGAGGATGTCCTTTCTCCACAACCTGCCCAAGGAGCTGCTGTGCCAATTCTCCAGGGCTACCACTGAGTCCATACTGTGCTCATCAGTTACCATCTGGTTCAGCTCTGTCACCCAGCTGGCCCAAGACTGTGGAATACCCTTCCACCTGACATCAGATCTGCACCCTCAGttgatgtttttaaatcttgcttga
>XM_034311603.1
atctgcTGAAACATGGCTGAGAGAGGCTATGTTTGTCAATCATCAAAAGCCCACTTACAGACCCGGGACATTTCTCTTCCACTGGATCATGAAAGAAGGACAAGACCACAGATTCAGCAATGTCAGAAATCGCCCTGGGATATTCTTTGTGTACTGGACCCTGCAAGgGCCTTATCTCTGTGCTGTGATATTGCTGTACACCACTGTACTCTGGGTACTACTGTGTCTCCAACGGAAGAGCAGatctAGCAACACTTCTTACTGATGAAATCCAATCACAAGTGGGCAGCGGAGATGCATCAAATAAATGACAACGTGTTATCCATC
>XM_034311604.1
atctgcTGAAACATGGCTGAGAGAGGCTATGTTTGTCAATCATCAAAAGCCCACTTACAGACCCGGGACATTTCTCTTCCACTGGATCATGAAAGAAGGACAAGACCACAGATTCAGCAATGTCAGAAATCGCCCTGGGATATTCTTTGTGTACTGGACCCTGCAAGgGCCTTATCTCTGTGCTGTGATATTGCTGTACACCACTGTACTCTGGGTACTACTGTGTCTCCAACGGAAGAGCAGTCCTAGGCCGCTCATCTGAAcaacataaaatatgaaatctaGCAAGTGGGTGGACAGGAGCAAGTCACGAGGATGTGGACTGGCTTTCCCTCTGCTGCAGACACAACAACCTGGAGCTAAACACCGGCAAGACAGTGGAGATGACAGTGGACTTTAAAAAAGACCCTACTCCTCTGCCTCCACTCACGATCCACAGTTGTATTGTGTCCAGCACTGAATCCTTCTAGTTCCTTGGCACCAACATCTGCAAGGACTTGATGTGGGAGACGAACATTGCTGCCATCACCAAGAAAGCACAGCAGAGGATGTCCTTTCTCCACAACCTGCCCAAGGAGCTGCTGTGCCAATTCTCCAGGGCTACCACTGAGTCCATACTGTGCTCATCAGTTACCATCTGGTTCAGCTCTGTCACCCAGCTGGCCCAAGACTGTGGAATACCCTTCCACCTGACATCAGATCTGCACCCTCAGttgatgtttttaaatcttgcttgaaaaca
>XR_004579669.1
gaaaaacaaataatgtcCTATAAGAATGTACGCGAATTGCGAAATATGATTTTGCACAATTCTCTAAGTTCAGGTCAGGAGCGACAGACGCCAGTCTTCGAGGGCCTCAGCACTACACAGTTTAGCCTTTCAACTCTTTTAGCAGAGAATACCTGGCTCTACTTAATAATTATCAAGGGCATTATGTACTGCACCTGGTGAGTCAGAAAAGGGAAACACGGATCGCTATAAGGCTGTGGACTATTAGTACCAGACCGCCTGCTCTCCCCGCCACTCTCTTAGCCTTGAAGTGTTGCAGGTGGCAATAAGATGTTCCCCCAAAACAACACTGCTTAAAACGTTTTTGGGTACAAATATTACTGACCAAGCAGTCGGACGATCTTTAAAAGTTAAATGTCCACAAATCAGACAATTCATAACTAAAACCATACTGGACTGTCAAACTGCTACTTATTCACTAACTAGTATTTGACCCGGGACATTTCTCTTCCACTGGATCATGAAAGAAGGACAAGACCACAGATTCAGCAATGTCAGAAATCGCCCTGGGATATTCTTTGTGTACTGGACCCTGCAAGgGCCTTATCTCTGTGCTGTGATATTGCTGTACACCACTGTACTCTGGGTACTACTGTGTCTCCAACGGAAGAGCAGatctAGCAACACTTCTTACTGATGAAATCCAATCACAAGTGGGCAGCGGAGATGCATCAAATAAATGACAACGTGTTATCCATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311602.1 True 1020 mRNA 0.47 4 16787806 16831861
XM_034311603.1 False 327 mRNA 0.46 4 16813384 16838649
XM_034311604.1 False 742 mRNA 0.49 4 16787801 16838649
XR_004579669.1 False 738 misc_RNA 0.43 4 16813384 16831259

Neighbor

gene id symbol gene type direction distance location
cs cs,LOC107707042,LOC107671863,LOC107697968 coding downstream 25108 16708190 ~ 16762693 (-)
si:ch211-207e14.4 LOC108276234 coding downstream 140100 16641460 ~ 16647701 (-)
sars1 sars,LOC107697960,LOC107671868 coding downstream 200053 16574026 ~ 16587748 (-)
uckl1b uckl1,uckl1b,LOC107697006,LOC107723126,LOC108411658,LOC107705741,LOC107673346,LOC103372048 coding downstream 1135196 15608285 ~ 15652605 (-)
zbtb46 zbtb46,zbtb24,LOC106676336 coding downstream 1226687 15455518 ~ 15561114 (-)
rapgef3 LOC108275659,LOC108425525 coding upstream 286370 17125019 ~ 17171019 (-)
LOC113530577 NA coding upstream 370236 17208885 ~ 17226734 (-)
LOC113530575 NA coding upstream 892063 17730712 ~ 17735744 (-)
taf8 taf8,LOC107594013,LOC107671856,LOC107723763,LOC107549030 coding upstream 908633 17747282 ~ 17754344 (-)
g0s2 g0s2 coding upstream 916943 17755592 ~ 17756555 (-)
LOC113530431 NA non-coding downstream 4924 16781128 ~ 16782877 (-)
G256162 NA non-coding downstream 150076 16636888 ~ 16637725 (-)
G256160 NA non-coding downstream 155353 16631392 ~ 16632448 (-)
G256166 NA non-coding downstream 158284 16628981 ~ 16629517 (-)
G256164 NA non-coding downstream 161184 16626242 ~ 16626617 (-)
G256208 NA non-coding upstream 13084 16851733 ~ 16852672 (-)
G256223 NA non-coding upstream 35913 16874562 ~ 16874767 (-)
G256296 NA non-coding upstream 195242 17033891 ~ 17034208 (-)
G256313 NA non-coding upstream 210003 17048652 ~ 17048999 (-)
G256368 NA non-coding upstream 265083 17103732 ~ 17106368 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 92770 16647823 ~ 16695031 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 967560 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 1470436 15258485 ~ 15317365 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other downstream 2083531 14699272 ~ 14704270 (-)
LOC113530423 LOC108276099 other downstream 2637220 14128963 ~ 14150581 (-)
dazap2 dazap2 other upstream 14279 16852928 ~ 16871164 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 1045594 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 1446837 18285486 ~ 18300687 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 1670499 18509148 ~ 18531252 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 2097928 18936577 ~ 19064582 (-)

Expression


Co-expression Network