march9 (march9,LOC107593952,LOC107599679)


Basic Information

Item Value
gene id march9
gene name march9,LOC107593952,LOC107599679
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20737744 ~ 20751871 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311607.1
ttgcatagcCGGATATCACCAACCTCCCTCTTTTTTAAAACCCGGACCAATGCACTGacgctttctttcttttcttcttcttttcttcttctttttgctcCAGTGAGACGGGACAGAGGCTTGAAGAGACTCTCGGATCGCTGCTGTGCTTTGATGCGGCGACGCGCCTGCTCTTCTTTacacataaacattttaaagagcGCATCAGTCGCTCCGGGCCGGAAAATCTCTCATCCGCACTAACATGCCATCAGACAGCAAATAAAAAGCATTGTAGTCTGTCTCGGGCCGTTTCTGGATCCTGCTGTGATATTACACGCTTATACCTTTATTCCCTGAGTAACAAGTAACGAGAACAGGCCTGCAGGTCTTCTAGAAAACACACCTACcaccagtaataataataataataataataatataataataataataataataataataataataataatattacatgtCAACACAGTAATCCGCGCGCTCCTTTTCACCTCTGGCGCACACCACACGCATGTAGTGAAAGATGTTCAAGAACCGGATCCGCATGTTTTTCAACGAGCTGAAGCTCCTGGTGTTCATGCGGTCCGGTCCTCGGCAGCCCGGCGTGGACGCAGGCACGAGTATGCGGGGCCTGGGCGCTATGGGCGGCTGCGGGTGGCGTGCGTTCTCCCGCTGCACCGGCGACCACGACCACGACGCTGAGGAGTACTACGGCAGCGATGCGGGCGCGAGGCGGAGCGCGGCGGCGGCGGGACTGGACGAGGGGACGCGCGTGCACGCGAACGCGGACGCCGTGTCCCTGAGCAGCGGAACCCGCACACCCCAGTGCCGCATCTGCTTCCAAGGACCTGAGCAGGGGGAGCTGTTGAGTCCATGCCGCTGTGACGGCTCAGTGCGCTGCACCCATCAGCCGTGTCTCATCCGCTGGATCAGCGAGAGAGgctcctggagctgtgagctcTGCTACTTCAAATACCAAGTGCTGGCCATCAGCACCAAAAATCCACTACAGTGGCAGGCCATCTCTCTGACCGTGATCGAGAAGGTGCAGATCGCCGCCATCATCCTCGGCTCGCTCTTCCTTATCGCCAGCATCTCGTGGCTGGTGTGGTCGTCGCTCAGCCCCTCGGCCAAGTGGCAGCGGCAGGACTTGCTCTTCCAGATCTGCTATGGCATGTATGGCTTCATGGACATTGTGTGCATAGGCCTCATCATCCACGAGGGTTCATCGGTCTACCGGATCTTTAAGCGCTGGCAAGCTGTCAATCAGCAGTGGAAAGTATTGAACTATGAAAAGGCCAAGGACTTGGGGGAGCCGATTAGTTCGAGCAGTAAGGCGACGGCGCGTGGCTCGCGCTCCAATCCTCACAGCCTGGGCAGTGGCAGCAGGAGGAATCAGCGCATTCGGAGGCTCAGGACTATCCTCAACCACCACTGCGGCTACACCATCCTGCACATCCTGAGTCAGATCAGGCCCAGCGAAGCGCGCCTCGCCTCCAACTCCAACCGCGAGGTGGTCATGAGGGTCACGACTGTATGAGGATGGGGGTGCACTCGCTCTAAGCTGCTGAGACACAGTGTGCAAAGACTTGTCCTGAGCAGCAGCTGTGTCGTGACTCATCAGATGACGTCTCGCTCTTGTTTCCTGAGCTGAGTGAAACATGCACTTGTCATAACTGAGAATATTAACATGCTGAAAAGGATGAACTTTGGAATTAAATGGTTcataaaatgaaacacacaagaAAGAGGACTGTCTTCGTGATCTGGCACACAAGCGCATTTTTATTTCGTCTCCTCTCTGGTGTCGTTTTATACCACTATGGTTTTTACTATGTTTCATTTTCTAAGGGCGTGTGGTTTTATGAACGGACGCTGCTGTACTGAATATAATGGCTTAAAAAAAGGACAGTGATGTTTACCAATGCTACAATtgagcaaggaaaaaaaaaaactaaccgTAACCAAACCGTGACAAAGGCACAACAACCAGGGAGCAAAGAATTCTTTACAATATaccaataaatacatttaacgAGAATATCATGAAGGGTAGGGTGCAATAAGATAAATAAAGGGATTATAACAGAGTGTtaagtacattaatatttaaaggaTTGGATTTTCTCTGCAATAAAGATACCTGTACATTTTGCAGTGAACTTTGCATGAGGGTAAAGTTTTGTGCCTCCTCAACATGAGGATATGATGAATCTGTTTTCATTTCGAATGGTGCttgttttaataaacactgctaTTCATCA

Function

symbol description
march9 Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MARCHF9 (membrane associated ring-CH-type finger 9).

NR:

description
E3 ubiquitin-protein ligase MARCH9

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10659 MARCH4_9_11; E3 ubiquitin-protein ligase MARCH4/9/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311607.1 True 2270 mRNA 0.50 5 20737744 20751871

Neighbor

gene id symbol gene type direction distance location
tspan31 tsn31,tspan31,LOC107599072,LOC107593953,LOC108433386 coding upstream 7811 20719865 ~ 20729933 (+)
LOC113530407 gpr182,LOC108275868 coding upstream 46130 20689186 ~ 20691614 (+)
LOC113530755 gpr182,LOC108275868 coding upstream 50966 20684365 ~ 20686778 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding upstream 57674 20668113 ~ 20680070 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding upstream 71687 20661406 ~ 20666057 (+)
LOC113530777 LOC108276216 coding downstream 131821 20883692 ~ 20886509 (+)
cptp cptp,LOC108433359,LOC107697856,LOC107599683,LOC107706969,LOC107664144,LOC107594044 coding downstream 148251 20900122 ~ 20902771 (+)
vwa5b1 vwa5b1,LOC107599492 coding downstream 167217 20919088 ~ 20953971 (+)
fam43b fam43b coding downstream 245798 20997669 ~ 20999732 (+)
LOC113530567 LOC108275599 coding downstream 300799 21052670 ~ 21056506 (+)
LOC117599266 NA non-coding upstream 25786 20708115 ~ 20711958 (+)
LOC117599265 NA non-coding upstream 38076 20696985 ~ 20699668 (+)
G258273 NA non-coding upstream 56806 20663682 ~ 20680938 (+)
G258162 NA non-coding upstream 80677 20611541 ~ 20657067 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding upstream 160955 20567790 ~ 20576789 (+)
G258362 NA non-coding downstream 34371 20786242 ~ 20790145 (+)
LOC117599282 NA non-coding downstream 156945 20908816 ~ 20911082 (+)
G258439 NA non-coding downstream 224027 20975898 ~ 20976359 (+)
G258460 NA non-coding downstream 333511 21085382 ~ 21088222 (+)
G258476 selenoi,si:ch211-197l9.4,LOC107549067 non-coding downstream 341458 21093329 ~ 21093844 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 223549 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 339030 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1032681 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1258849 19478302 ~ 19478895 (+)
pkig NA other upstream 1515185 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 151234 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 476449 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 786174 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1919527 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2619873 23371744 ~ 23383653 (+)

Expression


Co-expression Network