ccdc115 (ccdc115)


Basic Information

Item Value
gene id ccdc115
gene name ccdc115
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11256064 ~ 11258687 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311610.1
GTCATCTGCTATCAGCTGACTCTTgctgtcatgtgacctactatgGCGACGCGGTGAATGGAGAAACTACAGGATAGCATACAATAAAAACACCCAAATAATGACGCTTTATCACAATATATGAATTATTCTGTTATACTGCACAAAGTTGACTGTCGTTGTTTGAAATATATTAGACCTGAGAATCACACGTGTGGAAATGGGTCTAGATCCTGCCTCTCTACGCTTAGACCAGCAGTTACTAGATTTTATGGATCAGCTTGAGATGTTGGAggagaaaagacaaaaacttaacaCGCTCATAGAAGAGGGATGGTTTAACATTTCCAAGGCCCGTTACTCGATGGGGAACAAACAGGTCTCAGCCCTACAGTATGCCAGTGAGATGGAGCCACTTGTACATGTTTATGCCAGtgtacttcaAAAAGGGGAAGCAGAGTTCAAGTGTGAGCGAATCAATGGAAAAGCAGAAGAACTAAAAGAGAGTGATACAGTAGAGACCATAGGACCAGCAGAGGGAGGTCTCAGAAGGCgagtaaatgttaaaaagaaagaaaataaggaTGAAAAAGACAATTCCAAAGACCAATCTGAGAAGGAACCTCAATTTAATTCAAAGGGTGAGAAATCTCCATGTCAGCATCAAGATCCTCTGAACTGGTTTGGGATCCTTGTCCCACAAAACCTTAAGCAAGCTCAGGCAGCTTTTAAAGAAGTCATTACTCTAGCAGCTGAGATCTCAACCCTGCAGAGTGCGATTGTGAAAACTAGACTGGAGATGCAGACTCAGATGAAGGATAAACAGAAGATTGTCTCTGAATTGAAAGAATAGTGCATCACAcatgagtgtttagtgttttcctaactttatatttatttctcagaTGTTGTACTAGTCCCTTTTATGAACTACAATGTGAGTGATTCTtaatttggaaataaaaaatgaataattcttgTAATATGCTTTATAATGCGGTGATAAATGGCATGGTTTACAAATACATGTTTACACAGCCACCTTCCTGTCAATCAGCTACAGTAGTGAAGAATAGTAATAAATCTGATTTTCATGGGTAATTTTGCTAATTGTTACATTTTAAGTGAGGGTTTCTAAAATGTTCCTAACCTGTTGGATATTTCTATGTTGAATTCCTGgcaaatggccaaaaaaaagattttggaaCAAAATTATTTAGTGTTGAgctttcactgtaaataaaatgaaaatatttagtaCCA

Function

symbol description
ccdc115 Predicted to enable unfolded protein binding activity. Predicted to be involved in cellular iron ion homeostasis. Predicted to act upstream of or within vacuolar proton-transporting V-type ATPase complex assembly. Predicted to be located in endoplasmic reticulum. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be extrinsic component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIo. Orthologous to human CCDC115 (coiled-coil domain containing 115).

NR:

description
coiled-coil domain-containing protein 115

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
K23543 CCDC115; coiled-coil domain-containing protein 115

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311610.1 True 1242 mRNA 0.38 6 11256064 11258687

Neighbor

gene id symbol gene type direction distance location
si:dkey-109j17.5 LOC108276432,LOC108436326,LOC103033727 coding downstream 1458 11247652 ~ 11254606 (-)
apobec2b apobec2,apobec2b,LOC108276433,LOC107657013,LOC107712740,LOC107737624 coding downstream 13760 11238252 ~ 11242304 (-)
LOC113530590 LOC108275622 coding downstream 140391 11114279 ~ 11115673 (-)
atp6ap1lb atp6ap1lb,LOC108275547,LOC103031199,LOC108436292,LOC105890636,LOC107672058,LOC107737620,LOC107560932 coding downstream 206329 11043263 ~ 11049735 (-)
slmapb LOC108276397,LOC108436320 coding downstream 216609 11030067 ~ 11039455 (-)
trnae-uuc_4 NA coding upstream 356 11259043 ~ 11259114 (-)
trnan-guu_24 NA coding upstream 14643 11273330 ~ 11273403 (-)
fkbpl fkbpl coding upstream 15403 11274090 ~ 11277676 (-)
LOC113530844 LOC108275904,LOC108436332 coding upstream 113555 11372242 ~ 11376560 (-)
emp3b LOC108275556,LOC107562456,LOC107671979,LOC107737636,LOC107741326,LOC107560919,LOC108436335,LOC107657024,LOC105894294 coding upstream 179362 11438049 ~ 11444255 (-)
LOC113530615 fam208a non-coding downstream 164729 11089065 ~ 11091335 (-)
LOC113530895 NA non-coding downstream 217096 11037822 ~ 11038968 (-)
G252969 NA non-coding downstream 249447 11005952 ~ 11006617 (-)
G252967 NA non-coding downstream 258628 10994816 ~ 10997436 (-)
G252944 LOC107560942,LOC107672007,LOC107737604 non-coding downstream 343599 10904886 ~ 10912465 (-)
G253174 NA non-coding upstream 6222 11264909 ~ 11265149 (-)
G253383 NA non-coding upstream 94815 11353502 ~ 11354217 (-)
G253385 NA non-coding upstream 100828 11359515 ~ 11361585 (-)
G253384 NA non-coding upstream 104285 11362972 ~ 11364414 (-)
G253444 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 non-coding upstream 272017 11530704 ~ 11533297 (-)
abhd6b LOC108275644,LOC108436291 other downstream 231055 11020531 ~ 11025009 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other downstream 240398 11009463 ~ 11015666 (-)
sinup NA other downstream 617346 10636501 ~ 10638718 (-)
usp21 LOC108276040,LOC108432659 other downstream 786268 10460694 ~ 10469796 (-)
G252373 NA other downstream 1226071 10029492 ~ 10029993 (-)
LOC113530309 NA other upstream 197333 11456020 ~ 11462706 (-)
avpr2ab avpr2,avpr2ab,LOC108275514,LOC106567019,LOC106572707,LOC108436342,LOC107672000 other upstream 290707 11549394 ~ 11568603 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other upstream 580109 11838796 ~ 11859346 (-)
ptk6b LOC108276246 other upstream 897041 12155728 ~ 12167795 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other upstream 1638787 12897474 ~ 12934308 (-)

Expression


Co-expression Network