LOC117595661


Basic Information

Item Value
gene id LOC117595661
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 22693240 ~ 22698904 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311614.1
GCAGTGAAAGTTACTTTCTACTGCTACTTCCTGCAATAAACGAGCCAAAATACAGTCAGACCGAAAGACTACAATCAGCATGTGTACCATTTATACAAGAAGTGTTTGTTCCTGGGCTGGCCGCTTCTCAGAAACAAGCCATGATCTGGGAGAGGTGGTCTATAACAGGCCACTGACAGTGGATGAGGGGATACGCAatagTCAGTTATTGGTGTACTCCATAGACCTTCTCAAGTCCAAAACAGGTCAAAACCGCCTGGAACATCACACTGACCGTTACCAGAGCGAAAACCTCATCATCCGTCGAGGGCAGAGCTTTCAGATATGGATACAGCTCTCACGAGCTTTTGACCCCAGAGCAGACCAACTGCAGCTCCTGCTCAAACTCGgcgCTGTGCCCCGGGCAAAAGGCACCGTAGTGTCTGTTCCTCTAGTTACTGAGTTTCAGGGCAACAAGTGGGAGGCCAAGATTATCGAACAGAACAGCAATAAGATAAAACTGTCTGTCATCTCCCCACCGAATGCTCCTATTGGTCGATATGAGCTCAGTGTGATAACAAGAGACACCACTTTCAGTAACAAGCCTGAAAACGATATCTACCTGCTGTTTAACCCCTGGTGTAAAGATGACACTGTGTTTATGGATAATGAGGCTGAGAGGAATGAGTATGTGCTGAATGATGTGGGGATTATCTACTATggaaatcagaatcagattGGAGCCAGGACTTGGAATTTTGGACAGTTTGCTGATGGGATTCTGGCAGCGTGTCTGTTCATACTGGAGAAGAGTCAAGCCCCTGCTTCTGGTTGGGGAGACCCCATTACCATCACCAGACTTACGTCAGCCATGGTCAACTCTCCTGATGATCAAGGTGTGCTAGCGGGCAACTGGTCAAATAACTATGCAGGCGGGACTGCCCCAACAGCATGGAGCGGCAGTGTGAACATCCTGAAGCAGTACCACAAAAGCGGAGGATTGCCTGTCAAATACGGGCAGTGCTGGGTCTTCTCGGGGGTCACCACCACGGTCCTCAGGTGTTTAGGCATTCCCACTCGCAGTGTCACAAACTTCAGCTCTGCTCACGACACGGACAATTCCTTGACCACTGATGTGTATTTTGATGAGCATATGAGGCCAATTGAGAAGCTCAATGGTGATTCTATTTGgaatTTTCATGTGTGGAATGACTGCTGGATGGCCCGGCCTGATCTGCCACCCGGCATGGGCGGCTGGCAGGCTGTGGATGCCACGCCTCAAGAGACGAGCCAGGGCATCTTCTGCTGTGGCCCAGCACCCTTGGCAGCCATCCGTGAAGGACTGGTTTACCTCAAATATGATGCACCCTTTGTCTTTGCTGAGgtgAACAGTGACAGGATCTTCTGGCAGAGACAAGCTAATGGCAGCTTTGCTCAGATCTCCTGTGAGAAGAGCACAGTGGGCCGCTACATCAGCACCAAGGCAGTCGGTTCTGACCGCAGAGAGGACAtcacacacctctacaaacACCCAGAAGGATCTGAAAGGGAGAGAACCGCTGTGGAAACTGCTTCCCGCTTTGGCTCCAAGCCTAATACCTACATCTGTGCTGCTGCCAGTGATGTCACATTAAACGTTGCCCTGAAAGGGGAGGAGCCTCAGATAGGTCAAGATGCTCATCTATCCATCACTGTGAAGAACTGCAGTGCTGAGAGGCGCAGTATCTCCCTCCACTGCCAGGTGGCGGTCATATACTATACTGGAGTGCAAAAGGGCACAGTGAAGAAGGATGACATATCAGTGAATCTCAAACCCCGTGAAGCTGAGACACTGGTGTGGACCCTGCCTTATGACCAGTACAAGAACCAGCTGGTGGACCAGGCAGCACTGATGCTCACCGTGACTGGACGAGTCAGTGAGACAAAGCAGGTTCTGGCCACCCAGTTCAACTTCCGCCTGCGCACGCCTAACATTGTCATCACTCCTATAGGAGATGCTGTGGTGGGCAGAGAGACAGCAGTTAAATTCACATTTAAGAATCCACTACAGTGTGTCCTGAAGAATGCCGCTTTCCACATCGAGGGTTTGGGCTTGAAGGCCACAGAAGTGATCACCTTTGGTGACGTGGGCAGTCTGGCAACCATCAGCTTGACTGTGAAATTCACACCGTTCTTACCTGGTCTGCGGAAGCTTCTTGTCTCTCTGGACTGTGAGCAGCTCAGACAGGTTCACGGTGTTGCTGACATCTTCATCAAGTAg

Function

GO: NA

KEGG:

id description
K05619 TGM1; transglutaminase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311614.1 True 2239 mRNA 0.51 14 22693240 22698904

Neighbor

gene id symbol gene type direction distance location
rabggta rabggta,LOC107680063 coding upstream 26111 22658099 ~ 22667129 (+)
stxbp3 stxbp3,LOC107565974,LOC107748431,LOC107680060 coding upstream 37196 22643527 ~ 22656044 (+)
utrn LOC108275814 coding upstream 191588 22315172 ~ 22501652 (+)
trnal-uaa_2 NA coding upstream 381352 22311806 ~ 22311888 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding upstream 384458 22307353 ~ 22308782 (+)
LOC113530513 NA coding downstream 11089 22709993 ~ 22716146 (+)
LOC113530788 LOC108275601 coding downstream 22854 22721758 ~ 22735023 (+)
LOC113530713 dad1 coding downstream 43150 22742054 ~ 22744025 (+)
gmeb2 gmeb2 coding downstream 46162 22745066 ~ 22755933 (+)
stk35 stk35,LOC108439475,LOC107590481 coding downstream 76827 22775731 ~ 22783461 (+)
G259403 NA non-coding upstream 107431 22584557 ~ 22585809 (+)
G259268 NA non-coding upstream 190335 22502687 ~ 22502905 (+)
G259267 NA non-coding upstream 212140 22480557 ~ 22481100 (+)
LOC117599300 NA non-coding upstream 462560 22227964 ~ 22230680 (+)
G259131 NA non-coding upstream 542441 22148905 ~ 22150799 (+)
G259498 NA non-coding downstream 140313 22839217 ~ 22841739 (+)
G259536 NA non-coding downstream 314480 23013384 ~ 23015896 (+)
G259539 NA non-coding downstream 323066 23021970 ~ 23022448 (+)
G259540 LOC108276061 non-coding downstream 327542 23026446 ~ 23064569 (+)
G259690 ctnnbl1,LOC106942865 non-coding downstream 578530 23277434 ~ 23277909 (+)
LOC113530514 LOC108275916 other upstream 12698 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1150813 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 1454241 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1785781 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2179045 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 672840 23371744 ~ 23383653 (+)
G259993 NA other downstream 688634 23387538 ~ 23389314 (+)
G260415 NA other downstream 1333323 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 1569673 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1701680 24400584 ~ 24453538 (+)

Expression


Co-expression Network