LOC113525311 (LOC108414782,LOC103038743)


Basic Information

Item Value
gene id LOC113525311
gene name LOC108414782,LOC103038743
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24888734 ~ 24898675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311617.1
AAATTCTATCAGTGGAATTTCTTCACAAGGACAATAagataaacATCAGCTCTGAAGTTCAAAGATCATTCAGAGATCAGAGTGAGCGTGAAGTAGGAACTGCAGGCGTGTGTGAAATCTAGCAGAGTGATAGAGGGAAGAGCTTTGCAGCTGCACAGCTGCGCTGAAACCTGAgttaAAGATGTGTTCCACAGATTCAGGATGCTGCAGCCGAATTCGTTCCTTCCCCAAACCACGAGGCTTTCTCGCCTCTGTCatcacaaaaggtctgcTGGCTTTGCTGCTGCTTGGGGTTTGCTGGTCGGTGTTGGAGAAGGAGTGTGAGCCAGGACACAACATATTCGGTTTGGTGATTCTGTTCCTGAGCGCAGTGTGTGGAGGGAAACTGTTGGGATCAATTACACTGCCAAACCTGCCCCCTATACCACCCCTgctgggcatGTTGCTGATGGGTTTGGTGCTGCGTAATGTCCCGTACGTGAACGAGGCCGTGTTTATCGATCAAAAATGGTCTTCATCACTGCGTAGCATCGCTCTCGCCATCATCCTCACCCGAGCCGGACTCGGCCTGGACCCTGCTgctctGAGAAAGCTGAAGGCGGTGTGTTTGAGGGTGGCTGTGATTCCCTGCACTGTTGAAGCCTGTACTGTTGCCGTTGTATCTCACTTCCTCATGGGCCTGCCGTGGATTTGGGGCTTTATTCTAgggttcgTGTTATCTGCCGTCTCTCCTGCAGTCGTCGTTCCCTCCATGCTGCTCCTGCAGGCTGATGGTTTCGGGGTTCAGAAGGGAATCCCGTCACTCCTCATGGCATCAGGAAGCTTTGACGACATCCTCGCAATTACCGGATTCACCACCTGCCTCGGAATGGCGTTCGGCacgGGCTCCACATGGCTCAGTTTGGCAAAGGGACTGTTGGAGGTGGTGGTTGGGATTTTAGCAGGAGGGATTTTGGGTGTTCTCATCCATTTCTTCCCTAGTGAAgatcaggttgatCTGGTGTTGCGGCGCTCCTGCATGTTGTTGGGTTTGTCcgtgttctgtgtgtttgtgagtcaCGTGGCCGGGCTGGGCGGGGCCGGGGGGCTGAGCACACTTGTCCTCTCCTTCATCGCTGGAATGAGCTGGGACAAAAAAAAGgcTCCAGTAGCTGCTGTTGTTGGGAGGTTTTGGGACGTTTTTCAGCCTCTTCTCTTTGGACTGATTGGAGCTGAAATTACTATTTCTGCACTCAGCCCTAACACTGTGGGTTTAGGAATAGCTGCTCTCTGTGTCGGTGTTGTTGTTCGCGTGTGTGTGACGTTCACTGTTGTTCTGTTTGCTGGTTTTAACCTGAAGGAGAAAATCTTCATCTCTCTCGCATGGTTACCTAAAGCTacagtgcagGCAGCCATAGGTTCCACAGCCCTGGACATGGCACGTAACCTAGGAGACGAGCAGCTGGAGCGTTATGGGATGGACGTGCTGACGGTGGCGGTGTTAGCCATCATGATTACGGCTCCCATTGGCGCGCTCGCTATCGGATTAGCTGGCCCCAAACTGCTGCAGAAATACACTGAGATAGAggagacaaacacacaagAAAAAGCCGAAGATGTTTCACCTCCAGAAATACACGCACAGACACCTCAGGCTGTGGAGAGcaaactataaacacacacacacacacacacacacacacacacacacacacacacacacagctttactctttgcttta
>XM_034311619.1
cacacacacacacatgtctctCTTAGATCAGCTCTGAAGTTCAAAGATCATTCAGAGATCAGAGTGAGCGTGAAGTAGGAACTGCAGGCGTGTGTGAAATCTAGCAGAGTGATAGAGGGAAGAGCTTTGCAGCTGCACAGCTGCGCTGAAACCTGAgttaAAGATGTGTTCCACAGATTCAGGATGCTGCAGCCGAATTCGTTCCTTCCCCAAACCACGAGGCTTTCTCGCCTCTGTCatcacaaaaggtctgcTGGCTTTGCTGCTGCTTGGGGTTTGCTGGTCGGTGTTGGAGAAGGAGTGTGAGCCAGGACACAACATATTCGGTTTGGTGATTCTGTTCCTGAGCGCAGTGTGTGGAGGGAAACTGTTGGGATCAATTACACTGCCAAACCTGCCCCCTATACCACCCCTgctgggcatGTTGCTGATGGGTTTGGTGCTGCGTAATGTCCCGTACGTGAACGAGGCCGTGTTTATCGATCAAAAATGGTCTTCATCACTGCGTAGCATCGCTCTCGCCATCATCCTCACCCGAGCCGGACTCGGCCTGGACCCTGCTgctctGAGAAAGCTGAAGGCGGTGTGTTTGAGGGTGGCTGTGATTCCCTGCACTGTTGAAGCCTGTACTGTTGCCGTTGTATCTCACTTCCTCATGGGCCTGCCGTGGATTTGGGGCTTTATTCTAgggttcgTGTTATCTGCCGTCTCTCCTGCAGTCGTCGTTCCCTCCATGCTGCTCCTGCAGGCTGATGGTTTCGGGGTTCAGAAGGGAATCCCGTCACTCCTCATGGCATCAGGAAGCTTTGACGACATCCTCGCAATTACCGGATTCACCACCTGCCTCGGAATGGCGTTCGGCacgGGCTCCACATGGCTCAGTTTGGCAAAGGGACTGTTGGAGGTGGTGGTTGGGATTTTAGCAGGAGGGATTTTGGGTGTTCTCATCCATTTCTTCCCTAGTGAAgatcaggttgatCTGGTGTTGCGGCGCTCCTGCATGTTGTTGGGTTTGTCcgtgttctgtgtgtttgtgagtcaCGTGGCCGGGCTGGGCGGGGCCGGGGGGCTGAGCACACTTGTCCTCTCCTTCATCGCTGGAATGAGCTGGGACAAAAAAAAGgcTCCAGTAGCTGCTGTTGTTGGGAGGTTTTGGGACGTTTTTCAGCCTCTTCTCTTTGGACTGATTGGAGCTGAAATTACTATTTCTGCACTCAGCCCTAACACTGTGGGTTTAGGAATAGCTGCTCTCTGTGTCGGTGTTGTTGTTCGCGTGTGTGTGACGTTCACTGTTGTTCTGTTTGCTGGTTTTAACCTGAAGGAGAAAATCTTCATCTCTCTCGCATGGTTACCTAAAGCTacagtgcagGCAGCCATAGGTTCCACAGCCCTGGACATGGCACGTAACCTAGGAGACGAGCAGCTGGAGCGTTATGGGATGGACGTGCTGACGGTGGCGGTGTTAGCCATCATGATTACGGCTCCCATTGGCGCGCTCGCTATCGGATTAGCTGGCCCCAAACTGCTGCAGAAATACACTGAGATAGAggagacaaacacacaagAAAAAGCCGAAGATGTTTCACCTCCAGAAATACACGCACAGACACCTCAGGCTGTGGAGAGcaaactataaacacacacacacacacacacacacacacacacacacacacacacacacagctttactctttgcttta

Function

GO: NA

KEGG:

id description
K23994 SLC9B1_2; solute carrier family 9B (sodium/hydrogen exchanger), member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311617.1 True 1721 mRNA 0.52 13 24888734 24898675
XM_034311619.1 False 1703 mRNA 0.52 12 24888734 24898045

Neighbor

gene id symbol gene type direction distance location
tec tec coding downstream 36867 24836832 ~ 24851867 (-)
si:ch73-106g13.1 LOC108275824 coding downstream 52006 24828532 ~ 24836728 (-)
LOC117599302 NA coding downstream 106690 24775086 ~ 24782044 (-)
LOC113530888 LOC108275606,LOC107568964 coding downstream 114081 24771260 ~ 24774653 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding downstream 123661 24745883 ~ 24765073 (-)
LOC117599306 LOC108275826 coding upstream 23243 24921918 ~ 24929386 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding upstream 33909 24932584 ~ 24960018 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding upstream 79219 24977894 ~ 24982298 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding upstream 116537 25015212 ~ 25026090 (-)
ctc1 NA coding upstream 130120 25028795 ~ 25041468 (-)
G260942 NA non-coding downstream 14987 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 23844 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 158191 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 160365 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 163357 24724222 ~ 24725377 (-)
G260962 NA non-coding upstream 76040 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 144773 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 174036 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 189964 25088639 ~ 25089918 (-)
G260947 NA other downstream 5589 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 93311 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 380266 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 502479 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 572319 24273737 ~ 24316415 (-)
nfxl1 nfxl1 other upstream 62346 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 85304 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 142116 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 178098 25076773 ~ 25079035 (-)

Expression


Co-expression Network