LOC117599226 (LOC108275925)


Basic Information

Item Value
gene id LOC117599226
gene name LOC108275925
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18969994 ~ 18971248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311666.1
CAGACCTTCAGTACACATTAGAAGCAAAGGATTAGCTCTGGTGCATCGTGGATCGAGGAGAAAGGCACTGAATGGCAGCCATTCTGGGTACCAAGGATGGACTGGTATATGCAGAGAGCTCTAGTGCCCATACTAGACACAGTCATCATAGTAATTGGACTGCTGGGCCACTCATTGGTAATCTTCATCTTGGTAAGGAGGAGGCGGAAGACAGTGTCTCGGTCTTTTCACGGGACTGATACACTACTACTGGCCTTGAGCACCTCAGACATGCTGCTGCTACTCTCTTTGCCTTTCCACACAGCTGCAATTGCACTGGGCAACTGGCCTTTCGGAAGCTTACTATGCAAAGCTGTCAGCTTCCTGGGAGTGGCCTGTAACACCTTTAGTGCGTTCACCCTAGCTGCACTAGCAGTAACACGCTATATGACAGTGGTACACCCAACCTGGGCATACCACTCCAGGATGAAGCGCTGGCTTCAAGTCTCAGCAGTTCTGCTTTGGGCACCGGCTATGGCGCTGGCTGCTCCACAATTTGCCTTCCGCAACGTGGGCACGTACGCCGCAACACATTGCTTTGCCTTCCTCAGTGACATCAGCCAGGTGGTCTACAGCACTGCCCTCTTCTTGTTCAGCTTCGTCCTGCCTCTACTGGTCATCATCCTCATGTATGCCAAACTCTACAGTTTCCTGCGTAAGACTACCTTGCAGGGGCATGCTCTGCAGTTGCAACGCTATCATAGGTTGGTGACCCAAACCACAGCGTTGCTTGTTGTCGTGTTCACAGTCTGCTGGCTACCTTCCTATATAGTGATGTTCTGCCGAATTGGTAAGAGTGTCAACAGCACAAGCAGGCTTCGCTCTCTAGCACTGTTGGCACGGTTAATGGCCACATCATCTTCCATGGTCAACCCACTGCTGTATGCTTTTGTGTCACAGAAGTTCCGTCGGGAGTTGCTGGGCAAGGCAGGGTGTGGGGACTGTATGGTTGTGCGCTGGCTTGTGTGTTGTCCAGAGAGAAGCAGGGACATTGTACAGCCCTTTAACCCTGCAGAGCTGGAAACTACACCTCCACAATAGAAGCAAAAGACACTGATGTTGAAACCTCATTCTGTTATTAAGATTTCAAGAAtcttgtagggtttttttttaactagtaGCCAACTGAGGATGTCAAGCAGGGGACCATAATTTCAGTTTGTATTAGGAACAGAGCTTTAAAACAGAGCTGTATTGGGAAACTATAAAAGATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311666.1 True 1255 mRNA 0.49 1 18969994 18971248

Neighbor

gene id symbol gene type direction distance location
esyt1a LOC108276191 coding upstream 92648 18850483 ~ 18877346 (+)
pa2g4b pa2g4b,LOC108276026,LOC108425565,LOC107737517,LOC107593906,LOC107668344,LOC107591063,LOC107716155,LOC107673109 coding upstream 133054 18829063 ~ 18836940 (+)
erbb3b erbb3 coding upstream 143889 18786766 ~ 18826105 (+)
si:dkey-151g10.3 LOC108276398,LOC108425563,LOC107737519,LOC107673054 coding upstream 190337 18725277 ~ 18779657 (+)
fam3a fam3a,LOC102798212,LOC106567024 coding upstream 248834 18703452 ~ 18721160 (+)
trnae-cuc_34 NA coding downstream 61669 19032917 ~ 19032988 (+)
rbms2b rbms2b,LOC108275993,LOC108425569,LOC107716168,LOC107737513 coding downstream 119762 19091010 ~ 19117563 (+)
r3hdml r3hdml coding downstream 189965 19161213 ~ 19165261 (+)
hnf4a hnf4a,LOC107673078,LOC107737506,LOC107568408 coding downstream 196053 19167301 ~ 19187959 (+)
ttpal ttpal,LOC107716173,LOC107695756,LOC107673079,LOC107564663,LOC107568409 coding downstream 219524 19190772 ~ 19194858 (+)
G257127 NA non-coding upstream 33152 18891889 ~ 18936842 (+)
LOC113530356 NA non-coding upstream 123647 18841753 ~ 18846347 (+)
G257068 NA non-coding upstream 348689 18620249 ~ 18621305 (+)
G256899 bcas1 non-coding upstream 641738 18322069 ~ 18328256 (+)
G256851 zfp64 non-coding upstream 889662 18078167 ~ 18080332 (+)
G257196 NA non-coding downstream 94606 19065854 ~ 19066133 (+)
G257199 NA non-coding downstream 146629 19117877 ~ 19118533 (+)
G257235 NA non-coding downstream 261755 19233003 ~ 19235261 (+)
G257232 NA non-coding downstream 269864 19241112 ~ 19241568 (+)
G257234 NA non-coding downstream 271937 19243185 ~ 19245707 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 35675 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 1781617 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 1845043 17071136 ~ 17124951 (+)
G256046 NA other upstream 2461614 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 2573749 16363546 ~ 16396245 (+)
pkig NA other downstream 227178 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 507054 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 654281 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1419561 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1538996 20510244 ~ 20514195 (+)

Expression


Co-expression Network