podn (podn)


Basic Information

Item Value
gene id podn
gene name podn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24140115 ~ 24154488 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311702.1
ACTCTCCGTCTGCACATCTGGAACGATGGATCAGTTCTGAGTGGAGCTGCAGGTTCAAGCATTTGGACTTAAAACCTGCTGTGCAAAAGCTGGACTTTAATCTGAGTATTGCAGGACGGAGAGGTGTGTAGAGAAGAGTGTGATCTGTTCCTCCATCAAAGAATCGCCTGGTTCGGAGGTTTGGCCagaccagacacacacacacacacacacacacacacacacacacattcgggAGTGTGGGACTCTTTCTTGCCCAGAGGACAGTGTGTATTGGGTGTGTTAGCGATGATctggaggaggtgtgtgttaTGTGCACTTCTGCTTTGTTGGGCTCTCGTTCTTGGAGTCGAGCCTGAACACCAGCAGGAAGAACAACACACGGGGCAGAAGAATAAAGGAACAGAGAGAACAGGAGACAGGAAGGGGAATACGGTGCCGATGTGTCCGGATCAGTGTAGCTGCATGGCTGAGGAAGCTGTCGACTGCGCCGGGGTCAATTTATCCGAGTTCCCACAAGAGCTACCAGAAAACACACGCCAGCTCTctctgcagAATAATCAGATCTCGGAGATCAGAGCGGAGGATCTCTCACAGCTCCTTCATCTGGAGACGCTCAACCTGCAGAACAATCGGCTCACCACGGaggGCCTTGAAGATGATGGGTTTGAAGCTCTGGAGCAGCTCAGTTACTTATACTTGGCGAATAACAAGCTCACGGCAGCACCCAGATATCTTCCACCAAAGCTGGTTAGCGCTGACTTCGCTGCAAACCAGCTCACCACGATCTACCCCTACACGTTTGGCCAGAAACCGGGACTGAAGTCAGTGTACCTTCACAACAACAAGCTGTCCGACGCGGGTTTACCCGAGGGAATGTTCAACGGTTCACACAACTTGGAGGTGTTAATCCTCTCCAGCAACTTCCTGCGCTACGTCCCTAACGGCCTGCCAACTGCACTCTTCCGTCTTCATTTAAAGAATAACAGACTGGAGAAGATTCCTACAGGTGCGTTCGAGAACCTGCCTCATCTGAGAGAACTGTACCTGCAGAACAACCTCCTGAGCAACAGCGGCATGGATAACACCACTTTCAGTCATCTGAGCAGACTGGAGTACCTGGACCTGTCCAACAACAATCTGACTGCAGTACCTCTAGGTCTCCCTCGGACCCTGATGCTGCTCCACCTGGAGAAAAACTACATCACGTCTGTCAGGGTCGATTCCCTCAGCGCAGTGAAGGATCTTCAGTACCTGCTGCTTCATCACAACCGGCTTCGTGCTCGCCACATCCACCGCGACGCCTTCCGCGGTCTCAAGCGCCTCCACACGCTCCACCTGCACCACAACCTGCTGGAGCGAGTCCCTCTGGGCCTGCCGCGCCGCGCACACACTCTCGTGCTGCTCCGAAACTCCATCAGTGAGATCGGACGTGATGATCTCAGCACTCTTTACACGCTCAACGAGCTCAACCTGAGCTACAACCGCTTGACGAGCGAACGCCTCCATCGCCACGCCTTCAGGAAACTGCGAGTGCTGGAAGTCCTGGATCTTTCGGGGAACAAGCTGAGCACGTTGCCACTCGGGCTTCCGAAGAGCCTCCATGTCCTCCGGGCGAAGGATAATCAGATCGTCGAGCTGCCAGAGGGGGCGCTGACGGGCATGAGCAAGCTGAAGGAGCTCCATCTTTCTAATAACCAGATCAAACTGGGCTCCATCTACCAGGGGGCGTGGCAGGAGCTTGGCTCTCTGACGacccTTGATCTGTCAAGTAACCTGCTGTCTCATGTCCCTCCTGATCTTCCTGAGTCTCTGGAGTTCCTACATCTGCAGAACAACAAGATCAGCAGCATCTCTGCCACGGACTTCATCAGTACCCCCAACATCAAGAGCATCTTCCTGaggtttaACCGTCTCTCCGCTCTCTCCGTGGCTGAGGACTCCTTCTCTCACCTGTCCAAGCTGCAGGTGTTGGACATCGGACACGGAAACGTCACACCCCGCCGTAACCATGGAGACGAGACAGAGGAAGACTACACGGAAAACGAGGAAGAAGCGGAGCAACCGAAAAAACGATAAACTGAAGTGACCgttacatatagagtgtagatgatacaggtcatgtgactctgagCATTATTAATCATATAATTAATGACTCtgagtattattataataatcacagtcattaatatacagtcactactattattatataattaattactgTGAATATTACTGATGATATAAGAGTGTAGATGatggaggtcatgtgactctgagTGTTATTAATGATATAAGAGTGTAGATGatggaggtcatgtgactgagtGTTATTAATGATATAAGAGTGTAGATGatggaggtcatgtgactctgagTGTTATTAATGATATAAGAGTGTAGATG
>XM_034311703.1
ACTCTCCGTCTGCACATCTGGAACGATGGATCAGTTCTGAGTGGAGCTGCAGGTTCAAGCATTTGGACTTAAAACCTGCTGTGCAAAAGCTGGACTTTAATCTGAGTATTGCAGGACGGAGAGCAGGTGTGTAGAGAAGAGTGTGATCTGTTCCTCCATCAAAGAATCGCCTGGTTCGGAGGTTTGGCCagaccagacacacacacacacacacacacacacacacacacacattcgggAGTGTGGGACTCTTTCTTGCCCAGAGGACAGTGTGTATTGGGTGTGTTAGCGATGATctggaggaggtgtgtgttaTGTGCACTTCTGCTTTGTTGGGCTCTCGTTCTTGGAGTCGAGCCTGAACACCAGCAGGAAGAACAACACACGGGGCAGAAGAATAAAGGAACAGAGAGAACAGGAGACAGGAAGGGGAATACGGTGCCGATGTGTCCGGATCAGTGTAGCTGCATGGCTGAGGAAGCTGTCGACTGCGCCGGGGTCAATTTATCCGAGTTCCCACAAGAGCTACCAGAAAACACACGCCAGCTCTctctgcagAATAATCAGATCTCGGAGATCAGAGCGGAGGATCTCTCACAGCTCCTTCATCTGGAGACGCTCAACCTGCAGAACAATCGGCTCACCACGGaggGCCTTGAAGATGATGGGTTTGAAGCTCTGGAGCAGCTCAGTTACTTATACTTGGCGAATAACAAGCTCACGGCAGCACCCAGATATCTTCCACCAAAGCTGGTTAGCGCTGACTTCGCTGCAAACCAGCTCACCACGATCTACCCCTACACGTTTGGCCAGAAACCGGGACTGAAGTCAGTGTACCTTCACAACAACAAGCTGTCCGACGCGGGTTTACCCGAGGGAATGTTCAACGGTTCACACAACTTGGAGGTGTTAATCCTCTCCAGCAACTTCCTGCGCTACGTCCCTAACGGCCTGCCAACTGCACTCTTCCGTCTTCATTTAAAGAATAACAGACTGGAGAAGATTCCTACAGGTGCGTTCGAGAACCTGCCTCATCTGAGAGAACTGTACCTGCAGAACAACCTCCTGAGCAACAGCGGCATGGATAACACCACTTTCAGTCATCTGAGCAGACTGGAGTACCTGGACCTGTCCAACAACAATCTGACTGCAGTACCTCTAGGTCTCCCTCGGACCCTGATGCTGCTCCACCTGGAGAAAAACTACATCACGTCTGTCAGGGTCGATTCCCTCAGCGCAGTGAAGGATCTTCAGTACCTGCTGCTTCATCACAACCGGCTTCGTGCTCGCCACATCCACCGCGACGCCTTCCGCGGTCTCAAGCGCCTCCACACGCTCCACCTGCACCACAACCTGCTGGAGCGAGTCCCTCTGGGCCTGCCGCGCCGCGCACACACTCTCGTGCTGCTCCGAAACTCCATCAGTGAGATCGGACGTGATGATCTCAGCACTCTTTACACGCTCAACGAGCTCAACCTGAGCTACAACCGCTTGACGAGCGAACGCCTCCATCGCCACGCCTTCAGGAAACTGCGAGTGCTGGAAGTCCTGGATCTTTCGGGGAACAAGCTGAGCACGTTGCCACTCGGGCTTCCGAAGAGCCTCCATGTCCTCCGGGCGAAGGATAATCAGATCGTCGAGCTGCCAGAGGGGGCGCTGACGGGCATGAGCAAGCTGAAGGAGCTCCATCTTTCTAATAACCAGATCAAACTGGGCTCCATCTACCAGGGGGCGTGGCAGGAGCTTGGCTCTCTGACGacccTTGATCTGTCAAGTAACCTGCTGTCTCATGTCCCTCCTGATCTTCCTGAGTCTCTGGAGTTCCTACATCTGCAGAACAACAAGATCAGCAGCATCTCTGCCACGGACTTCATCAGTACCCCCAACATCAAGAGCATCTTCCTGaggtttaACCGTCTCTCCGCTCTCTCCGTGGCTGAGGACTCCTTCTCTCACCTGTCCAAGCTGCAGGTGTTGGACATCGGACACGGAAACGTCACACCCCGCCGTAACCATGGAGACGAGACAGAGGAAGACTACACGGAAAACGAGGAAGAAGCGGAGCAACCGAAAAAACGATAAACTGAAGTGACCgttacatatagagtgtagatgatacaggtcatgtgactctgagCATTATTAATCATATAATTAATGACTCtgagtattattataataatcacagtcattaatatacagtcactactattattatataattaattactgTGAATATTACTGATGATATAAGAGTGTAGATGatggaggtcatgtgactctgagTGTTATTAATGATATAAGAGTGTAGATGatggaggtcatgtgactgagtGTTATTAATGATATAAGAGTGTAGATGatggaggtcatgtgactctgagTGTTATTAATGATATAAGAGTGTAGATG

Function

symbol description
podn Predicted to be active in extracellular space. Orthologous to human PODN (podocan).

NR:

description
podocan

GO: NA

KEGG:

id description
K25037 PODN; podocan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311702.1 False 2409 mRNA 0.51 10 24140115 24154488
XM_034311703.1 True 2412 mRNA 0.51 10 24140115 24154488

Neighbor

gene id symbol gene type direction distance location
LOC113530544 LOC108275752,LOC103033099,LOC108440029,LOC107737066,LOC107687592,LOC107590493 coding downstream 67260 24065262 ~ 24072855 (-)
tut4 zcchc11 coding downstream 93461 24023625 ~ 24046654 (-)
LOC113530771 LOC108276005 coding downstream 119166 24013748 ~ 24020949 (-)
wdr63 wdr63 coding downstream 188477 23928316 ~ 23951638 (-)
ccn1 cyr61,cef10 coding downstream 332062 23805473 ~ 23808053 (-)
scp2b scp2,LOC108275753,LOC108440020,LOC104921750,LOC108246649,LOC102203975,LOC100698399,LOC106529297,LOC106928213,LOC103139825 coding upstream 6742 24161230 ~ 24164179 (-)
LOC113530542 LOC108275757 coding upstream 36692 24191180 ~ 24202172 (-)
nhsa LOC108275756 coding upstream 50538 24205026 ~ 24269375 (-)
LOC113530540 LOC108275466 coding upstream 167184 24321672 ~ 24340163 (-)
LOC113530519 LOC108261257,LOC108270753 coding upstream 197407 24351895 ~ 24370680 (-)
LOC117599232 NA non-coding downstream 9 24136489 ~ 24140106 (-)
G260371 NA non-coding downstream 259787 23880087 ~ 23880328 (-)
G260369 c15h1orf52 non-coding downstream 264799 23874519 ~ 23875316 (-)
LOC117599235 NA non-coding downstream 267240 23868507 ~ 23872875 (-)
G260071 NA non-coding downstream 617407 23522215 ~ 23522708 (-)
G260548 NA non-coding upstream 58846 24213334 ~ 24225958 (-)
G260581 tmem27 non-coding upstream 150741 24305229 ~ 24306670 (-)
G260823 LOC108273545,LOC108268894,LOC108263642,LOC108270753,LOC108261282 non-coding upstream 195767 24350255 ~ 24435869 (-)
G260833 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 non-coding upstream 294070 24448558 ~ 24453499 (-)
LOC117599219 NA non-coding upstream 444623 24599111 ~ 24600250 (-)
LOC113530810 LOC108275656 other downstream 160420 23973365 ~ 23979695 (-)
G260310 NA other downstream 375952 23763674 ~ 23764163 (-)
e2f1 e2f1 other downstream 822651 23308899 ~ 23317464 (-)
LOC113530288 vstm2l other downstream 899768 23192257 ~ 23240347 (-)
si:ch73-217n20.1 NA other downstream 1159129 22961578 ~ 22980986 (-)
reps2 reps2 other upstream 119249 24273737 ~ 24316415 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other upstream 219785 24374273 ~ 24386255 (-)
tent5ab LOC108275717 other upstream 346641 24501129 ~ 24508468 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 633202 24787690 ~ 24795423 (-)
G260947 NA other upstream 726470 24880958 ~ 24883145 (-)

Expression


Co-expression Network