itchb (LOC108276113,LOC108442805,LOC108233117)


Basic Information

Item Value
gene id itchb
gene name LOC108276113,LOC108442805,LOC108233117
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23331249 ~ 23359264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311749.1
CCTTATTTCCGGTCACGTGAGACCGACCGGGAACAGGAACATGGCGGAAGTTTATCTCTCGAAGTAAGCCCgagaattaaaaaacaaaacaaaaaaaaaaacaaggaggcGTCTGGGCTTCAAATTTGATCTGCAACCCTATTAAGGTCTCAGACCCGGCGTTGTTCCATGGCCTCCACCGTTCCCAAACCAGGCCCTGGCAATGGCCACCCCATGAAGGCTCCGCTACGGATCACTGTGACATCAGCCAAGCTGAAGGAGAGCAAGAAGAACTGGTTCGGGAAAAGTCTGTACGTGGAGGTGATAGTAGACGGCCAGTCCAAGAAGACGGAGAAGTGCAGCAACACAAACAGCCCCAAGTGGACGCATCCTCtcaatgtGCTCGTGTCACCCTTCAGCAAGCTGAATTTCCGTGTATGGAGCCAGAAGACGCTGAAGTCTGACGTGCTCTTGGGCACGGCCACGCTCGACATCAGCGAGACGCTCAAGAGCAACGACATGAAGCtgtgtgacGTGATGCAGATGTTGCCGCTGTATGCAAACAAGGAGCAGACGGACGTTGTTGGagatctgtctgtttgtctgaaCTGCATGCAGTTCGACCCGGAAGCGTTCGCTTCTGCTGAGGCTAATAACAAcaCCACGACAGACGGAGAGTCGCAGCAGAACGAGGACGTCGGCACGAGgaggagcagagagggttCTCCGAGTGTGGCGGACGTTCCTAACGGACGTGCCGTCAACGGAACCGGGTCTCCCTCCATCTCGAATCGGGGGTCACGACCCCAGAGGCCGCCCAGACCCTCTCGACCACCGCCGCCCACCCCACGCCGACCGCTGTCTTCTCCGGCATGCCCCTCTAACGGTTCAGTCACAGACAGCAGCAGCTCGACTCAGCCAGAGACACCGGTGCGGATCCCTAACGCCACCCCTGACCCGCCCGTCGCCCGTCGCCCCTCGCCCACCCGGATGCCCATCACCAACACCGGGCCTCTGCCACCAgggtGGGAGCAGCGAGTGGACCAGAGCGGCCGTGTGTACTTTGTGGATCATGTGGAGAAGAGGACGTCGTGGGAGAGACCTGAGCCTCTGCCTCCTGGTTGGGAGCGGCGCCTGGACCCTTTGGGACGTGTGTACTTTGTGGATCACACGAGCCGGACAACAACATGGCAGCGTCCCACTGTGGAGACGGTGCGCAACTACGAACAGTGGCAGCACCAGAGGAGCCAGTTAGAGGGGGCCATGCATCAATTCAACCAGCGCTTCATCTACGGcGTGCAGGATCAGGCTGCAGCTGCTCAGAATACAGAGTATGACCCACTCGGCCCACTGCCACATGGATGggAGAAGAGAACGGACGCTACTGGCCGAGTGTATTTTGTGCACCACCCGACTCGTTCCACGCAGTGGGAGGATCCTCGCACTCAGGGGCTGTTGAATGAGAAGCCGATGCCCGAGGGCTGGGAGATGAGGTTCACCGTGGAGGGGACTCCGTACTTCGTGGATCACAACAGGAGAACCACCACCTACATCGACCCGCGGACGGGAAAATCATCACTTGAAAACGGCCCTCAGATCACCTACGTGCGTGACTTCAAAGCCAAAGTTCAGTACTTCAAATTCCAGTGTCAGCAAATAGCGATTCAGCAGCACATCAAGATCACGGTGAGCCGCAAATCGCTATTCGAAGACTCCTTCCAGCAGATAATGAGCATTAATCCCCCAGACCTTCGCAGAAGACTGTGGATCATCTTCCCTGGGGAGGAAGGCCTCGACTACGGTGGTGTAGCAAGGGAGTGGTTCTTCTTGTTGTCCCACGAGGTTCTCAACCCCATGTACTGCCTGTTTGAATACGCTGGCAAGGATAACTACTGCCTGCAGATCAACCCAGCTTCATCCATCAACCCAGACCACCTCAAATACTTCCGCTTCATCGGACGCTTCATCGCCATGGCTTTGTTCCACGGGAGGTTCATTGATACAGGCTTCTCGCTGCCTTTCTATAAACGTATTCTTAACAAACCTCTGACTCTGAAAGATCTCGAGTCCATCGACCCCGAGTTCTACAACTCGCTCATCTGGATCAAagaCAACAACATCGAGGAGTGTGGTCTGGAGATGTTCTTCTCAGTGGATAAGGAGATCCTCGGGGAGATCACAACTCACGAGCTGAAACCAGATGGAGGCAACATTCTGGTCACAGAGGAGAACAAAGAGGAGTacatcagGCTGGTAGCTGAGTGGAGGTTGTCCCGAGGTGTCGAAGAACAGGCGCAAGCTTTCTTCGAGGGCTTTAACGAGGTCCTGCCTCAGGAATTCCTGCAATATTTTGATGCCAAAGAACTCGAGgtgtTGCTGTGTGGGATGCAGGAAATCGATCTGGCTGACTGGCAGAGAAACACcatctacaaacactacacacgcACCAGCAAGCAGATCGTGTGGTTCTGGCAGTTGGTTAAGGAGATGGACAACGAGAAGCGAATGCGTCTGCTGCAGTTCGTCACCGGTACCTGCCGCCTGCCCGTGGGCGGGTTTAATGATCTCATGGGGAGTAACGGCCCACAGAAGTTCTGCATTGAGAAAACAGGGAAGGAGAACTGGCTGCCCCGGAGTCACACATGGAGAATCTGTCTGATGGATTAAATCCTGCTGAGACGGAATCACACCAGAGAGAGGAACTGAAACATGCTCTCGTCATGCACaaggt

Function

NR:

description
E3 ubiquitin-protein ligase Itchy-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311749.1 True 2710 mRNA 0.55 25 23331249 23359264

Neighbor

gene id symbol gene type direction distance location
ctnnbl1 ctnnbl1,LOC107694421 coding downstream 51739 23244729 ~ 23279510 (-)
rprd1b rprd1b coding downstream 144943 23181609 ~ 23186306 (-)
dlgap4a LOC108276061,LOC108439469 coding downstream 204293 23019730 ~ 23126956 (-)
pfkfb2a pfkfb2a,LOC108276158,LOC108439471,LOC104942567,LOC103358644 coding downstream 326642 22986458 ~ 23004607 (-)
LOC113530928 NA coding downstream 509052 22813004 ~ 22822197 (-)
LOC113530415 NA coding upstream 34408 23393672 ~ 23395815 (-)
LOC113530552 NA coding upstream 164149 23523413 ~ 23527413 (-)
abce1 abce1,LOC108275804,LOC108441533,LOC107653221 coding upstream 188161 23547425 ~ 23556299 (-)
LOC113530272 LOC108275809 coding upstream 197696 23556960 ~ 23562364 (-)
LOC113530683 LOC108275807,LOC108441536,LOC107550164,LOC107694430,LOC105904845 coding upstream 260270 23619534 ~ 23628378 (-)
G259897 NA non-coding downstream 149657 23180382 ~ 23181592 (-)
G259839 NA non-coding downstream 308569 23022414 ~ 23022680 (-)
G259838 NA non-coding downstream 309679 23021361 ~ 23021570 (-)
G259812 NA non-coding downstream 312889 23017306 ~ 23018360 (-)
G259809 NA non-coding downstream 318887 23010849 ~ 23012362 (-)
G260055 NA non-coding upstream 109537 23468801 ~ 23469073 (-)
G260056 NA non-coding upstream 114786 23474050 ~ 23474641 (-)
G260071 NA non-coding upstream 162951 23522215 ~ 23522708 (-)
LOC117599235 NA non-coding upstream 509243 23868507 ~ 23872875 (-)
G260369 c15h1orf52 non-coding upstream 515255 23874519 ~ 23875316 (-)
e2f1 e2f1 other downstream 13785 23308899 ~ 23317464 (-)
LOC113530288 vstm2l other downstream 90902 23192257 ~ 23240347 (-)
si:ch73-217n20.1 NA other downstream 350263 22961578 ~ 22980986 (-)
G259306 LOC108275814,LOC108411446 other downstream 881822 22446030 ~ 22449427 (-)
cpeb2 cpeb2,LOC108276376 other downstream 1282861 22016047 ~ 22048388 (-)
G260310 NA other upstream 404410 23763674 ~ 23764163 (-)
LOC113530810 LOC108275656 other upstream 614101 23973365 ~ 23979695 (-)
reps2 reps2 other upstream 914473 24273737 ~ 24316415 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other upstream 1015009 24374273 ~ 24386255 (-)
tent5ab LOC108275717 other upstream 1141865 24501129 ~ 24508468 (-)

Expression


Co-expression Network