rnf150b (rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535)


Basic Information

Item Value
gene id rnf150b
gene name rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23605104 ~ 23617167 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311840.1
tgcactgtgttcAGGGGTTAGTAGTGACGTGGAGCGCGTTGTCATGGAATCCCACAGTGCACCTGATAGTGGAGTCGGTTTGGGACGCGGCCAGGCTGGAAAACACGATGGTGGTGTTTATGTGACGGAATGTGGGCGCACCGTGACACAACGCTGAACAAAAATCGTTAATCCGTTTATTAAAATCCCGTACCGTgagcgccacacacacacacacacacacacacacacggtgctcGTGCATGTTAGATGTAGGGAACAGTGTGTGGGGATTAGGACGCCATTTGGAACGCGACGCACGAGCGCGTATCATGGACCAGCGTTAGAAGCGGCCGCGCTCGCGCTCGCGCCTCTGCACCGGAGAGAAAAGGGAGAATGTGGCGCTCGGTAACGGAGGCATGCCGCGGCCTCGCGCTGTCCGTGTGGCTCGTGTCGCTGTGCTCGGTGCACGCGCCGTGCCTGGACTTCGCGGCGGAGAAGGAGGAGTGGTACACGGCCTTCGTCAGCGTCACGTACGTGGACCCGGTGACGGCGGAGCTGCGCACCGAGAAGAGCGAGTGCGGCCACTACGGCGAGCATTCCCCCAAGCGCGACGCCAAGGGCTTGCTCGCCACGGCGGCGTCCGCGCGCGAGCGCCACGCCTGCGACCCCAACACGCGCTTCGCCGTCCCCGACCGAGCCGGCGCGTGGATCGCCCTGGTCACGCTCGGAAACTGCACGTTCAAGGATAAAATCCGCCACGCGTCCGGACAGAACGCCTCCGCCGTCGTCATCTTTAACGTCGGGGCTTCCAACGCCAACGAGACCATCACCATGCCACATCCGGgtacGGGTGATGTGGTAGCGATCATGATCCCCGAGCACAGAGGCCGTGAGCTGGTGCTGTTACTGGAGAGGAACGTGACGGTGAACATGCACATCACCATCGGGACACGAAACCTGCAGAAGTACGTGAGCCGCACATCCGTTGTCTTCGTCTCCATCTCCTTCATCGTCCTCATGATCATCTCGCTGGCGTGGCTCGTCTTCTACTACATCCAGAGGTTCAGATACGCCAACGCCCGAGACCgcaaccagaggcgACTCGGTGATGCAGCTAAAAAGGCCATCAGTCAGCTCCAAGTACGGACCATCAGGAAAGGAGACCAgGAGACCGAGTCAGACTTTGATAACTGCGCTGTGTGTATCGAAGGCTACAAGCCTAACGATGTGGTGCGAATTCTCCCCTGCAGGCATGTCTTCCATAAAGGCTGTGTGGATCCGTGGCTGGTGGACCATCGCACGTGTCCCATGTGTAAAATGAACATCCTGAAAGCGCTCGGGCTCACGTCGAGCGCAGAGTGCCTGGAGGAACTCCCTCTGGACTACGACCTGGCTGTTGGGGGCGTGGCCCTGAACGCCATGGTGATGAGCGACGACGTCCTGGCAGGTGACATCACAGGGCGTGACCCCGGGGTCAGGATGGTGGGTCTCCCTCAGGTCCTCCTGGACTCGGAGCCCATCACAGAAGACACCTTGCTGACTGAGCAGAGTGAACTTCAGCCAatagtgagcagcagttctgaagCATCGCTTGCCGCAGGGGCGGGGCAATACGATAtggacacacccacagacagCGTGAAATGCCGACCGGGCAGCAGCCTCGGGCACTCGAACCACGGATGCGCGGACTGAGTCGTCCCCTGCGACGGCGGAGTAGCCATGGCGACGGGAGACGCTGACTGAGCTTCCAGTGGAATCTCCTAGCCGATGACATCACACTATGACATCACTGCCTGCTGCATTCTTACCCTTtactctttctgtgtgtctggtGTTTGAGGAGGAGACGCACCAGCTCCTCTTTCTCTGTTGATTTACTTCAGAGTGTACACTCGAGTACCGTATATTCCGGATTATAAGACGCGGTTTAACTGCATAGCAGGTGCTGGGGTTGGGTCACTGCACACTTAGCCTCACGTCGCCGGATTATAAATCACCACACTGTGGCCGAATTCTCAACACGGCGTTCAGCTTCGTACTTGAAACGTGTACACACCAGCCATCGCTAGACTACACTGAAACTATACGTTCAGCATTTAAAGCTACCTGTAAGAAATATGCAAGAAACAGACATTgaatagttttttattttactgagtTAGACGATCcgttaaactgaaaaaaaaaaaaaaaaaaaaaaaaaacactggttgTAATCTTTTATTAGCATTATCTAAGTTGAGTTATTGATATACATATTGCTTTAGCAGAAACTTTAAGGGGATGTGGTGACCAAAGTGGCGTcattgttacaaaaaaaaaac

Function

symbol description
rnf150a Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human RNF150 (ring finger protein 150).

NR:

description
PREDICTED: RING finger protein 150

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311840.1 True 2309 mRNA 0.55 8 23605104 23617167

Neighbor

gene id symbol gene type direction distance location
LOC113530551 NA coding upstream 619 23584779 ~ 23604485 (+)
LOC113530971 NA coding upstream 21125 23572197 ~ 23583979 (+)
anapc10 anapc10,LOC107550153,LOC107564421 coding upstream 36431 23563545 ~ 23568673 (+)
otud4 otud4 coding upstream 59031 23530494 ~ 23546073 (+)
slc10a7 slc10a7,LOC107725722,LOC107752196,LOC107694411 coding upstream 83289 23510603 ~ 23521815 (+)
si:ch211-149b19.2 LOC108275803 coding downstream 13426 23630593 ~ 23634770 (+)
si:ch211-149b19.3 LOC108275812,LOC108441537 coding downstream 19080 23636247 ~ 23642564 (+)
LOC113530587 col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408 coding downstream 54879 23672046 ~ 23763537 (+)
znhit6 znhit6 coding downstream 152068 23769235 ~ 23798029 (+)
ddah1 ddah1,LOC107570409,LOC106584046 coding downstream 192313 23809480 ~ 23864438 (+)
G260074 NA non-coding upstream 42720 23527428 ~ 23562384 (+)
G260083 NA non-coding upstream 50027 23554596 ~ 23555077 (+)
G260011 NA non-coding upstream 130660 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 136047 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 242814 23344862 ~ 23362290 (+)
G260222 NA non-coding downstream 209725 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 244475 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 250484 23867651 ~ 23869556 (+)
G260232 NA non-coding downstream 300714 23917881 ~ 23918391 (+)
LOC117599261 NA non-coding downstream 385382 24002549 ~ 24003381 (+)
G259993 NA other upstream 215790 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 221451 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 924562 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2062677 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2366105 21228320 ~ 21238999 (+)
G260415 NA other downstream 415060 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 651410 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 783417 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1007770 24624937 ~ 24636129 (+)

Expression


Co-expression Network