emc1 (emc1,LOC107593385)


Basic Information

Item Value
gene id emc1
gene name emc1,LOC107593385
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10140734 ~ 10152722 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311841.1
TTGCTTTCGGGTCCTAAACCGCAAGGAATTCTGGGAGCTGATCCTCTGCAGCAATGTCTGTCTTTCTAGCTAggttgtttatttctttatatttattatgttttgcTGCGGCTGTTTTCGAAGACCAAGTGGGAAAATTTGATTGGAGACAGCAGTTTGTTGGTGAGGTGCGTTTCGCACTCTTTGATAGTCATTCCCAAGCATCTAAAAAGCTCCTGGTTGCAACAGAAAAGAATATTTTTGCCTCCCTCAATTCCAGAACTGGAGAGCTTTTCTGGAGACATGTGGACAAGCCAGGACCAGAGGGACACATAGATGCGCTTCTGGTTCACGGGCAAGATGCTGTCGTTGTTGTTGGGAATGGACGTCTTCTGCGTTCCTGGGAGAGCAACATCGGTGGCCTGAATTGGGAGACAGTGCTCGATACTGGAAGCTTTCAGTCTGCTGCCTTTGTTGGAGTGCAGGACCTGGTGAAGTATGTAGCAGTGCTTAAGAAATCTGCCATCTCTCTACATTACCTCTCCAATGGCCATCAGAAATGGGTGGAAAATCTCCCAGACAGTGACACTATTCAGTATCAGATGGTCTATTTTGGAGGAAATGGGCCTCTTTTCATTCTGGGTGTGGTCCCCAACTCTCACATAGTTATTGTTGAATATAACATTGAAGATGGAGAAATCATGAAACAGAGATCAGTAGATGCTCCGTGGGTGAGCAGCTTACAGTCCAGCTGTGTGGTGGTTGGTCCTGGAATGCTTTTATGTGTTGACCCGAGCACAGAGTCCATGTACACCTTGCCACTGCAATCTGAGGACCTGCCGAAAGCAACCCAGATTCCACTCCAGACTGTGGGCCTAGAGGTGGCTTCAGGGTTTCAACCACGTTTGATCTCCACTCAGCCTCACCCTGCCCGTCCTCCTCTGTCTGAATTCCTCCTGCAGCTCGGGCCAGAACATCACGCCCTGCTGCAGCTTAACGACGGCACCCTTACTCTTCTCAGAGACTTTAACCCATCATACCTGGTTGCTTTTGCAAACACTGGGGAAAAGACAGTCGCTGCTGTTATGTCACCAAAAAATGAAACGGTGAGTATAGAGCCGAGAAGTGCCTAATTTTAAAGTAGCAATTACtgtaatatgtttttatgtctaTTTCAAGCATGCACTATCAGCTTGTTCAGTGCTGATGCAGGAAGGAGGCTCCTTGATACCTCTGTCACCTATTTCCTGGATCCTAATGGAGGAAAGCCAACTAGGTTGTATGTTAATGCCTTCCTGAAGAAAGATGACTCGGTGGGCTACAGGGTGATTGTACAAACTGAAGATCATGTTCTGACTTTCCTACAGCAGCCTGGCCGGGTAGTGTGGACTAGAGAGGAGGCGCTCGCCGATGTGGTTACTATGGAGATGGTGGACTTGCCGCTTACTGGTACACAAGCAGAACTGGAGGGCGAATTTGGAAAGAAAGCTgCTATTCAAGACGGGCTTTTAGCCATGGTTTTAAAGCGACTCTCGTCCCAGCTCATCCTTCTGCAGGCCTGGGTTGGCCATCTGTGGAAACTCTTCTACGACGCCCGAAAACCTCGCAGCCACGTGAAGAATGAAGTCACTATTGAAACCTTGTCTCGGGACGAGTTCAACCTGCagaagatgatggtgatggtgactgcctcagggaagCTATTTGGCATTGACAGTAAGTCTGGAACCATTTTGTGGAAACAATACTTGAAGAATGTCAAGCCCAACTCGGTTTTCAAACTGATGGTGCAGAGGACAACTGCTCATTTTCCTCATCCACCTCAATGCACTCTACTCATTAAGGATAAGGACACAGGCCTGGGAAGCCTCCATGTCTTTAATCCTATTTTTGGCAAGAAGAGCCATATCAGTGTTCCAGCTTTATCCAGACCTGTCCTTCAGTCCCTGCTGCTGCCCGTAATGGATCAGGACTATTCCAAAGTCCTTCTTCTGATAGATGATCAGTATAAGGTCACAGCTTTCCCATCCACTAAGAACGTCTTGCAGCAGCTGCAGGAGATGGCGTCTTCCGTTTTCTTCTACCTGGTGGACTCCAGTCAGGGCAGACTGTCTGGTTTCCGCCTACTTAAGGATCTGTCCACTGAACTCATCTGGGAGGTGGTCATCCCCACTGAGGTGCAGAAAATAGTTGGGGTGAAAGGCAAGCGTGCTAATGAGCATGTCCACTCCCAGGGCAGAGTCATGGGGGACCGCAGTGTGCTTTATAAGTATCTGAACCCCAACCTGCTTGCAGTGGTAACAGAAAGCACAGACACCCATCAGGAGCGCAGTTTTGTGGGGATTTTTCTCATCGATGGCGTGACTGGCCGTATTGTCCATGAAGCTGTGCAGAGGAAGGCACGAGGACCTGTTCACTTTGTGCACTCTGAGAACTGGGTAGTGTATGCGTATTGGAACACAAAGTCTAGGCGGAATGAGTTCTCTGTGATCGAGCTCTTTGAGGGAATGGAgctgtataacagcacagtgttcAGCTCTTTGGATAGACCTCACCCACCTCAGGTTCTTCAGCAATCCTACATATTCCCCTCTCCTATAAGCACTCTCGAAGCCACGCTTACTGAGAAGGGAATCACCAGTCGTCACTTACTTGtggGACTCCCATCAGGAAACATCCTGTCTTTACCAAAGATGTTTCTGGACCCACGGAGACCAGAAGTGGCCTCAGAACAGAGCCGagaggaAAATCTCATACCATATTCTCCTGAAATGCCAATACGCACTGAGTGGTTTATTAACTACAACCAAACTGTGTCAAGAGTAAGAGGTATCTACACTGCCCCATCTGGCCTGGAGTCTACATGCCTGGTGGTTGCATATGGCCTTGATATCTACCAGACCAGAGTTTACCCTTCCAAACAATTTGATGTCCTTAAggatgattatgattatgtacTGATCAGCAGCGTACTCCTTGGTCTATTCTTCGCTACCATGATCAGCAAGCGGCTGGCAGAAGTAAAATTACTTAATCGTGCATGGCGATAAAACACAACTATTTGGCCTGACAGCTGCACTCTTCCCATTTAAGCCATGTGATTGACACACTGATGGCACTAGACCAGCTGATGCCCATGTTAGACTGCAAGATTACAGTGAGCGTTGTGAAAGACAACTGTTCGGGCTGAtggtagaatttttttttttttttttttttaaagaaaggcTTACTGTCTTTAATGCCAGAAAGGTATAAATAGTATCTCCCCACTCCATTAAGCAGTTCattcttaaattatttattgtaaatgtaGACCCACTATCTGTTTTAGGAATGAATTCTCTATGGGATGTTCACATTTCTACTGAGATAACATTATTgcaatgaattaatgaaaattaatttatataatgtttgtgtgtatgctaACGTTGGTCAATTTTCATGAAATATAcctcttaataaataaaaaatagctttAAAGGTAGACTCTACTGTTTGTAACTTAGATATAACTTTAACCAGTGGCCTACATCTTTTTGATGCTAAACTACATActaattgtgttttttaattCTAGGACCTGAGTCTACCTTTAAACTGATGGTCAAGTACTGTATAAttgttattaatgaaaaaaaagtataaatacagAGGAATTGTCAACCCTTTGTATGAGAATGTgaaagaattaattaaatttggGAATTTGAGGTGGTCAATAAAGTTCAAATGTTTTGCTGTAGGAATGGaagtatgttttgtttaaaaaaagaagaagaacaacaaccaACCATCTGTACTAGGTGCTGAAGGTCTGAAGTTCCTCTTTCTGcagtttattttaaacttgGTTTTATGTTGGCCAGTGGTTGCTGCGGTTAGTGTTGCTGCCAagtagctccagggtccccgtttcaatcctgagctcagctatCTGTCTATAATGTGAAGTTTTGCATGTTGTCCATGTTTGCGTCGGTGTCTTCTGGGATCTCCGGTTTAcacccacctcccaaaaccatgctGGTAGggggattggctacactaaattgtccctaggtgtgcgtgtgtatgtgcatggtgtgctgtgatggactgatgcaccatccagagtgtattcctgcttgAAAATCCTCTATTTTACTGTTAACTGCCTCCGACATCATGCATTtctaattaaactaattaaatcTAAAGAATCTGGGTCAGGGATTGAAATGATGTGAAACTCTCAATTGCAGTGGATCCCAAGTACTGCTCTTGGGGAAACACTGACTTGTTTTAGGTGATGCACTAGACTGGTTAATAGTatatcctatttttttttataaccatgATCTGTGGCTTATCTTgtgttttattgatttgtttggaATCATCACCACAGCTACCtaattttctcccatttttaATCACCATCAACCAATAGATCTTGAGTACCAAGAGTACATCTGTGTTTTCTTGCTGGACTGGATAAAAttgttcttttcatttcatgttgttttaAGTGTATGTAATTTCGAGAACACAAAAGTAATTTAGTAGTTTGAAAGCCATCCCTAACTGTTGACAATGATAATAAAAAGAGATTTCAAACACCA

Function

symbol description
emc1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of EMC complex. Orthologous to human EMC1 (ER membrane protein complex subunit 1).

NR:

description
PREDICTED: ER membrane protein complex subunit 1 isoform X1

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component

KEGG:

id description
K23562 EMC1; ER membrane protein complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311841.1 True 4586 mRNA 0.44 23 10140734 10152722

Neighbor

gene id symbol gene type direction distance location
ubr4 ubr4 coding downstream 1443 10092732 ~ 10139291 (-)
iffo2a iffo2 coding downstream 49581 10065107 ~ 10091153 (-)
LOC113530596 LOC108276390 coding downstream 77989 10057524 ~ 10062745 (-)
LOC113530745 LOC108275587,LOC108275676,LOC108275637 coding downstream 90118 10049304 ~ 10050616 (-)
LOC113530854 LOC108275587,LOC108275676,LOC108275637 coding downstream 93369 10046185 ~ 10047365 (-)
megf6a megf6,LOC108276135 coding upstream 190076 10342798 ~ 10372696 (-)
ttc34 ttc34 coding upstream 250455 10403177 ~ 10411529 (-)
si:ch211-112c15.8 NA coding upstream 260004 10412726 ~ 10420802 (-)
ccdc30 ccdc30 coding upstream 286122 10438844 ~ 10458808 (-)
arhgef3l LOC108276039,LOC108434749,LOC107712679,LOC107593396,LOC107699573,LOC107565836,LOC107737584 coding upstream 317777 10470499 ~ 10479864 (-)
G252479 NA non-coding downstream 84651 10054877 ~ 10056083 (-)
G252331 NA non-coding downstream 220586 9917429 ~ 9920148 (-)
G252311 vps13d,LOC107712684,LOC107687459,LOC107737673 non-coding downstream 245209 9895284 ~ 9895525 (-)
G252265 NA non-coding downstream 291038 9847116 ~ 9849696 (-)
LOC117599281 NA non-coding downstream 431931 9704915 ~ 9708803 (-)
LOC117599207 NA non-coding upstream 27066 10179788 ~ 10181888 (-)
LOC117599279 NA non-coding upstream 91319 10244041 ~ 10288684 (-)
G252610 NA non-coding upstream 243673 10396395 ~ 10396740 (-)
G252783 NA non-coding upstream 502592 10655314 ~ 10655522 (-)
G252833 NA non-coding upstream 557673 10710395 ~ 10711491 (-)
G252373 NA other downstream 110741 10029492 ~ 10029993 (-)
LOC117599234 LOC108275963 other downstream 369171 9768247 ~ 9771563 (-)
ttll10 ttll10 other downstream 1562134 8566656 ~ 8578600 (-)
ctnnbip1 ctnnbip1 other downstream 2630943 7476205 ~ 7509791 (-)
nmnat1 nmnat1 other downstream 2732477 7399793 ~ 7408257 (-)
usp21 LOC108276040,LOC108432659 other upstream 307972 10460694 ~ 10469796 (-)
sinup NA other upstream 483779 10636501 ~ 10638718 (-)
LOC113530950 smim4,zgc:193598,LOC108436318,LOC108276132,LOC107570281 other upstream 856741 11009463 ~ 11015666 (-)
abhd6b LOC108275644,LOC108436291 other upstream 867809 11020531 ~ 11025009 (-)
LOC113530309 NA other upstream 1303298 11456020 ~ 11462706 (-)

Expression


Co-expression Network