plekhg5b (plekhg5)


Basic Information

Item Value
gene id plekhg5b
gene name plekhg5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18540263 ~ 18565527 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311881.1
ATGAAAGCCCGGCCCCGGAGACGTTACACTGAAGACCCCACAAAGGAGTGCTTCACTCTCAAATTCGACCTGAACATTGATATAGACACGGAGATCGTTCCTGCCCTGAAAAAGAAGACACTGAGAGAGGTGCTGGGACCTGTTTTTGAGCGTAAGGGGATTGAGTTGTCTCGAGTTGAGTTGTTCCTGGACCAGTCCAACACCCCCCTGTTACTCAGCTTTGAGGCCTACCCTTTTGGAGGACACTACATTAAAGTTAAAGCTCGTCATGGAGATGAGCTGAAGGTGGAGAAGGAAGTGAAGGAGTCTCTCACGTTGCCCAATATGAAGATTTCAGCTGGGGGTAGTCCCTACATCCTCAGTCCCTCCCAGGACAAGGTTGAACATGGCTCACTTACCCGCCAAGAGAACGTGGACATACTGGGTCAGGGTCAAGCACGTCGGCGGAAGAACATGACCGAATTTCTGGGTGATGCCAACATCCCGTCTCCAGACTCCTTGGCCCAGCTCGGTGGCTCTCTTCCGGCCATCACCCCTTCTGCTTATGATAAACACAAGAACCGCAGTTCTAGCCGCTTTAGCGGTTTCTTCTTCCCCTCTTACAAGgagGTGGACCGTGTGGAGCAGCTCAATAATAAACTACAGATGTACACGTGCCATGGCTTGCCTAAGGTGCATCCACAGATCTCCTTCCACCATGACTCctgggaggaggaggaagtaGAGCCTGACCTGACACTTGAGGACAGCTGGCAACAGCTGCTGGACAACTCTGAGGCTCTGGGCAGGCGGCAGTTCCACCAGCAAGAGGCGATATGGGAACTGTTGCACACTGAAGCCACCTACATCAAGAAGCTGAAGGTTATCACTGATCTTTTCCTGTGCGGCCTGCTAAACCTGCAGGACTGTGGCCTCCTTAACGAAGTGGAACCAGCCAAGCTGTTCAATAACATCCAAGACCTGGTGCGAGTACACACAGCGCTGTGGAGTCAGGTCATGGTGCCGGCGCTGCAAAAAGCTCGCCAAGACCGGAGTCTGCTCGATCCAACTGATCTGTTCGAGGGCTTCCAAACTTTTGCATCCAGGTTCCAGCCATACCTCCGCTACTGCATGGAGGAGGAGAGCTGTATGGAGTATATGCGCACTCAGTTGAGAGACAACGAGCTCTTCAGGATCTACATCACATGGGCTGAGGGGAACAAGCAGTGCAATCGGTTGAAGTTGGCCGACATGCTGGTGAAGCCACACCAGAGACTCACCAAATACCCCCTGCTACTCAAAACCATCCTGAAGAAAACAGACGAACCTGCAGCAAAAGCCTCTCTCCTGAGCATGGTGGCGAGTGTGGAGAGCTTCATCAACAGTGTGGACTCTCAGATGCTGCAGAGGCAGGAGCAGCAGAAGCTGGCGGCCATTTCAGCTCAAGTAGAGAGCTACGAGGCCGTGGAGGGAGGCAGTGAGGAGGTGGAGAGGATCCTGAAAGAGTTTAGCCACATTGACCTGATGGCACCTATGATTGACGTCTCGTCAGAGGAGACCAGACAGCTCCACCTAGAGGGAGCGCTACGTATGAAAGAAGGCAAAGACAGCAGGATGGAAGTCTATTGCTTCTTATTCACCGACCTCCTGCTCATCACAAAGCCTGTGAAGCGTTTAGAGAAGGTGAAAGTGATCCGGCAGCCCCTCCTTCTCCATAATGTTGTGTGCAAGGAGCTCAAAGACccagGTTCTTTTGTTCTCATCTACCTCAATGAGTTCAAAAGTGCTGTGGCTGCCTACTCGTTCCAGGCCAACAGCGCCTCCCAGGGGCGAAGCTGGATTGACACAATCAGCACTGTGAAGACCCAGCTGCAGCGGCTGCGTTTTGAGGAGTCTGGACGTCACCAGCCTGGACAAAAACCAAGCCtagaggaggaggatggaggcGAGCAGAGCAGTAACTCCACTGCCAGCTCTCCACGCCTTGGAAATAAAGGACAACTTAACACAGGGAACTCGGACGGCTCCACAGAGACGCTGTCCGTGATGGAAACGGAGGATTCAGGAGCATGCTCAGATCTGCAAACCGATTCTGACACAGTGCCATCGAGCTCCAGCCTTCCCAGCAGCGTCGAGCTCCAGCCTTCCCAGCATGCCTCAGAGGGCTCAGAACTTGAGCCAGAGTATCGCAGTCTGTCCATGGACAGTGCCTATGGCACACTTTCCCCTGAGTTGCTGCTGGATCTGCAAACTCAGACATCCACCAGTGAGCAGGACAGCACAGAGGAGGAGACCGAAGGAGACAGTGGAGAGGTAGCAGCAGAGGAcgaggagaaagaggaagaagaagaggaagagtcTGATGACAGGAGCTCATCAGGCTCTCGAATCTCAGTAGCATCCCATCTGAAACCCAGACGGCGTCCACCGGTGCAGTTTCGCATGCGCTGTCTCAAGAAGCTGGTAAATAAGTGTCATTCAGAGGACAACCTGCTGCAGCGGGTCAATGGAGAGGACACGCAGAGCACAGGCGAAGACGTCGCACAGAGCTCGGCTGCCCCTAACCAGCTGGGTCTGGAGTGGGCAGAAGGGCTGGCACACAGCAAGAGCCTGACCGAACTAAACCTAGGTAACACAGAAACATCTCacgagagagaaacagagagaacacagagtGAGCGATTGGGGCACAGCTTGCCGTCCTATGTGTTCAGGAACACACTGAGGCGGCGTAAGTACAGAAAGGATAAAAAGAAAGGCATAATGGACTGCAGCGGATCAGACGGAGATATTACACCCCCTGGATCTCAGGAGGGAAATTGTGGTGCTTCAGAGGATGAGATGAGCAGTAGGAAGATATCACAGCAGCACAAGAAGCTCACGCTGGCACAGCTACATAGAATACGCAACACACTGGTGCTGAACTCCACACTTACAGCCTCGGAAGTGTAGAAACGGCCACTTCGTCACTCCGCCAGCAGCACCACTTTCAGCCTGATAGGACTGACTTGCTTGCCACATGAATGCACTCTAACCAATGAGCAGAACTCATGAGCTTTTTGCACTTTTGTAATAATACAAGTAGCTTTCATAAGAGGGGAGCTAAGCTTCAGGAGAAAAAGATCTTGAGCAAGCTGCGGAACATGGGAAAAGTTCCAGCCTTGCTCTGGTCCATTTGTGCACTTGGACCTGATCAGAAGGGGAAGAAAGGACAGAAGAGTCGAAGGGTTGAAGTAGAGCATGCGGTTAAATAATGGCACCTTGTATTTCCAGAAATTTAACTTCACTGTTCATGTGAGGCCTTTTCAAAAGAgttaaaagaaacacaaatctCTCAATCACCATGTTTTTGTTCAACCTTTACACATTATTCTACAATGGGGATATACCTCTGGGGATATATTTGGAGGTGAGTTTCATTTCAGGTTTGTGCCCTCACCCTCCATTTCAGTCTGTCCACATGACTTTCTTACATGGTTCTCTCAATGCTTAAGAGGCAACCAGTGCTCCTCCAGCTGCCATATATGTGTTAGGAAAACCGAGAAAGCCATATGGAGGTCATACGGAGGCTGTCTATATGAGGaaaaagcaaaaccaaaaattAGGCTGTAATTGCACAATCCAAAAGTTTGAGTAATCTGTTAACAGTTCACACATTCACTGTATTTCttttgggtgtgtttgtgtatgatgtgtatgagtgtatgatgtTGACTGTGAACATGTAATACCATCAaggttgtttgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatgtaaattatgacCTGAAATACACGCTGAAACCAAAAATAGCTATTTGAATATAGCATGATAAATGACTTGAGTAGCCACTGAATAGGCTACATAAAACACGAGGACCAGTATTAACAGTAAAGCAGCAGTGATTGcttagtcagtgtgtgtgtgtgtgcgcgcatgttaTATTCAATGCGGTCTCATTATTTCTGCAAAGTTAATACTGGAGAGTAGCTTCTTACTCTTTAGTACTAAAAATATGAGGTGAACTGAAACTAAGAAGAGATTGACAGGATTCCATACACAAAGCATTGAAAGTGACAAGAAACCGAATTGCTTTATTAAACGTAACGTCACATGAGTTTTGCTTTAAGACTGAAGAACGTGGTCAGGTTTTGCGTTTTGAAataattggggaaaaaagtccTCATCAGGGCTTTACTCCAGAGCTCTGTAACACTGCAATATTGTCTACATACATTTCCCACTCATTTTGGGTGAGTATCATATGGTTTAGTTTAAGGACTAATGGAGAATCACCTGATCACAGATCAGCACTTATTAGGAACCACTTTTGGAATTTTTGGAGCTAATTCAAGACACTGAACATATAACGGGATTTGGGTTTAGACTGAATTACCTGGTTTCTGCAAACCTCACATTAACATTAGggttatttatgaaaataatgaacaaatggCCTACATTTCTTAATAGTGTTTAAAGGTGTTAAAATTACATTCTGCCTAATTAACTAAACCAAATCCTTATAAATGTACTATTTGTAAATTTGCCCAAAATTAATATTGTGCATTAAATGTTTACTTCTTAGTTGTTTTtgttcataatatttattaagcttgctttgtttttatatatgaaacctggtttgtaaatgtattgtttatttcatgactgtattttttttgtttttttttttttcaggtttaatttgttcaattgtcatttgtttaattaagaGGTTAATCTGCTGAGAACCAAAATAACCTTGTTCCCAGTGTTGGGGAAATGGTCCTGCGTGTAATAAAAAGGCATCTGATCTTA

Function

symbol description
plekhg5 Predicted to enable guanyl-nucleotide exchange factor activity. Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cell-cell junction; cytoplasm; and lamellipodium. Predicted to be active in axon; endocytic vesicle; and plasma membrane. Implicated in Charcot-Marie-Tooth disease recessive intermediate C and distal spinal muscular atrophy type 4.

NR:

description
PREDICTED: pleckstrin homology domain-containing family G member 5 isoform X1

GO: NA

KEGG:

id description
K19464 PLEKHG5; pleckstrin homology domain-containing family G member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311881.1 True 4828 mRNA 0.47 18 18540263 18565527

Neighbor

gene id symbol gene type direction distance location
irx7 LOC108275649,LOC107751843 coding downstream 38452 18500181 ~ 18501811 (-)
LOC113530281 LOC108275500,LOC106567306 coding downstream 62464 18440875 ~ 18477799 (-)
cbln4 cbln4,LOC106567122 coding downstream 105277 18425365 ~ 18434986 (-)
bcas1 bcas1 coding downstream 200610 18308254 ~ 18339653 (-)
zfp64 zfp64 coding downstream 454971 18075318 ~ 18085292 (-)
avpr2aa avpr2,LOC108275493 coding upstream 91568 18657095 ~ 18675212 (-)
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding upstream 127880 18693407 ~ 18703924 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 553504 19119031 ~ 19127613 (-)
trnak-uuu_17 NA coding upstream 562937 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 564581 19130108 ~ 19142474 (-)
G256929 NA non-coding downstream 190571 18348843 ~ 18349692 (-)
G256689 NA non-coding downstream 749356 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 806214 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 807800 17732097 ~ 17732463 (-)
G256613 NA non-coding downstream 818330 17721723 ~ 17721933 (-)
G257322 NA non-coding upstream 87566 18653093 ~ 18653315 (-)
LOC113530357 NA non-coding upstream 243536 18809063 ~ 18863122 (-)
G257458 NA non-coding upstream 369370 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 373955 18939482 ~ 18939782 (-)
LOC117599228 NA non-coding upstream 552322 19117849 ~ 19119020 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 9011 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 239576 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 626986 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 1669099 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 1701614 16787801 ~ 16838649 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 371050 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 805160 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 865923 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 917566 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 1535472 20100999 ~ 20109212 (-)

Expression


Co-expression Network