LOC117595686 (plekhg5,LOC107714916,LOC107697827,LOC107664198)


Basic Information

Item Value
gene id LOC117595686
gene name plekhg5,LOC107714916,LOC107697827,LOC107664198
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 18565524 ~ 18607418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311882.1
aggaggaggaggaggagaaagaggtcCAGTAAGCtgctgatgaatgaatgagtgtgaatgGGGGGAGGATTAAATACACTTGGGTGACCAGAAGTAAGCAGTAGGACGACATTGAtagtaataacaaaaaaaaagacgcTCATGTTTAGCTCAGCAAGAAAAAAGAATCAAGCGAAAATCAAGCcaaggagaagagaaaaacacaatgtTGGAAGGAAGGAAACCTGAATGAGGTGCAGACAGAGCTGCTTGTTATGGAAACACTAGACGACTTGCAGTCAAAGTCAGCGCAACAGCTCCTTAGCAGAGTTAGCATCAACAAGACAGCCTCACGCGCTTTAAACCGCGACTGACTACCCAGTCGCACAATTCCTTCTGAGTTGCTTCTGTAAACGACTCGGAATAAATGAGCCACAGCGCCAGAGGATGGTTCCGAGTAAGTGGACTATTAACACAGCTCTTCATCACAAATCCCCTCCGAGAAGCTGGCTTGGTATCCGACTGCGTCTCAATGAGAAGGCTGCCcaggaggaggagtgtgtggagtgtcaGCATCCAGACTGCAGTGAGCGCCGTCGGGCCTCCAAGGTGTGCCATCATCCCGACTGTCAGGATCTGAACAATAAGAGTCCTCTTCACCTGTGCGAGTCATGCGACTCTCGCTGCCACTCTGACGAGAGTGACAACATGCACGTTGACCGTCACCCTCGCTTTGACCTGCAGCCACAgaGTTCCATCCTGGCCCGGAATGTGTCTACTCGCTCCTGCCCCCCACGCACCAGCCCTCCTTCTGACctggacgaggaggaggagggcgGCACCGAGAAAGGGTCAGTCTGCCTTAAATTATGA

Function

symbol description
plekhg5 Predicted to enable guanyl-nucleotide exchange factor activity. Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Predicted to be located in cell-cell junction; cytoplasm; and lamellipodium. Predicted to be active in axon; endocytic vesicle; and plasma membrane. Implicated in Charcot-Marie-Tooth disease recessive intermediate C and distal spinal muscular atrophy type 4.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311882.1 True 852 mRNA 0.51 6 18565524 18607418

Neighbor

gene id symbol gene type direction distance location
irx7 LOC108275649,LOC107751843 coding downstream 63713 18500181 ~ 18501811 (-)
LOC113530281 LOC108275500,LOC106567306 coding downstream 87725 18440875 ~ 18477799 (-)
cbln4 cbln4,LOC106567122 coding downstream 130538 18425365 ~ 18434986 (-)
bcas1 bcas1 coding downstream 225871 18308254 ~ 18339653 (-)
zfp64 zfp64 coding downstream 480232 18075318 ~ 18085292 (-)
avpr2aa avpr2,LOC108275493 coding upstream 49677 18657095 ~ 18675212 (-)
idh3g LOC108276129,LOC108425561,LOC107673097,LOC107737522,LOC107591068,LOC107716150,LOC107593912 coding upstream 85989 18693407 ~ 18703924 (-)
si:dkey-21c19.3 LOC108275992,LOC107737512,LOC106572650 coding upstream 511613 19119031 ~ 19127613 (-)
trnak-uuu_17 NA coding upstream 521046 19128464 ~ 19128536 (-)
LOC113530333 faim2 coding upstream 522690 19130108 ~ 19142474 (-)
G256929 NA non-coding downstream 215832 18348843 ~ 18349692 (-)
G256689 NA non-coding downstream 774617 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 831475 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 833061 17732097 ~ 17732463 (-)
G256613 NA non-coding downstream 843591 17721723 ~ 17721933 (-)
G257322 NA non-coding upstream 45675 18653093 ~ 18653315 (-)
LOC113530357 NA non-coding upstream 201645 18809063 ~ 18863122 (-)
G257458 NA non-coding upstream 327479 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 332064 18939482 ~ 18939782 (-)
LOC117599228 NA non-coding upstream 510431 19117849 ~ 19119020 (-)
LOC113530839 LOC108275928,LOC108425553 other downstream 34272 18509148 ~ 18531252 (-)
znf217 znf217 other downstream 264837 18285486 ~ 18300687 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other downstream 652247 17884243 ~ 17913277 (-)
dazap2 dazap2 other downstream 1694360 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 1726875 16787801 ~ 16838649 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 329159 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 763269 19370687 ~ 19387041 (-)
LOC117599227 LOC108275551 other upstream 824032 19431450 ~ 19437634 (-)
magi3a magi3,LOC108275952 other upstream 875675 19483093 ~ 19621613 (-)
kansl2 kansl2,LOC107593923,LOC107716132,LOC107737532,LOC107591080,LOC107687436 other upstream 1493581 20100999 ~ 20109212 (-)

Expression


Co-expression Network