ptpn22


Basic Information

Item Value
gene id ptpn22
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19439436 ~ 19465336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311885.1
CAGTTGGACAGAatgagaaatggagagagagagaaaaagagagagagagagagagagagagagagagagcagaaaaaagACTAGTGAGAGAGGCAAAGTGAGAGAAGAGAACAAGTTAGCAAGAGAGAGGTAGAGATGAGAACAGTGGTGGTATTTTTATTCTGACCACAGAAACCTCTTGACAAGCTTCCGTGACGACAGCCCATCTAGTGCTTCTGCACTTGGGTTCCTCAAAACTCAAAACTTGGGCAACTTCTCAGCTGAAGGGAGCGATGACAGACAGgctgagtgaaagagaaagaaagagagagtgagtgagagaagttgagagacagagggggagagagagagagaaacagagtgtaCAAGCCACTGGGGCCTTCAAAGCCATGTGACATGACAGAGGGCACTGCCGGGGGACGCGCCGCACTATGGAACTCCAAGCTCAGCTCCTGAGGAGCTTCCTGGCCCAGTTTGCCAGCAAAGAGGCCACATCAGCTCATGAAGACGGTGCCTATGCTGTTGAGTTCTTGAAACTGAAGAGGCAGTCCACCAAGTACCGCACAGAGAAGACCTACTCCACCAAGGTTGCGGAAAGGCAGGACAACGCGAAGAAGAACAGATATAAGGACATTGTTCCATTTGACCACAGCAGAGTGAAGCTCTCACTGAACACCTCCAAAAATGACACGGACTACATCAATGCCAATTTCATCCGGGGAGTTTGGGGGCCAATGGAATATATTGCCACTCAAGGCCCACTGCCACACACAGTTCTGGACTTCTGGAGGATGCTTTGGGAATACAATGTGCAGgTTGTCGTGATGGCTTGCAGGGAATTTGAAATGGGAAGGAAAAAGTGTGAGCGCTACTGGCCTGAAACTATGGTggatgtatttgtgtgtgagcCATTTACAATATACTGTGAATCAGAAGAGAACAAGGGAGACTATTTGATAAGGATCCTGAAGGTGACTTATAATAATTCATCTCGCACACTGAAGCAGCTGCACTATATGAACTGGCCTGATCACGGTGTTCCAGACTCCATCCCCCCCATTCTGGAGATGCTGCAGGACATGCGTATGTTCCAGGAGCAGGATGATGTCCCCATCTGCATCCACTGCAGTGCCGGCTGTGGAAGGACAGGGGCACTGTGTGTCATTGACTACACTTGGAACCTACTGAAAAAACAaATGATACCAGAGGACTTCAGCATCTATGACCTGGTTCAGGACATGAGAACACAGAGGCCTTCCATAGTCCAAACTAAGGAGCAGTATGTACTGGTGTACAGAACGATTAAATTCCTGTTTGAGACACATCTGCAGATGATAGAAGTCAAACTCAAAGAGAATGGAGAAGTCAGATTGTTGCCTAATGATGAGCATTTGTCCTTTAACATAAATCAGGTTCTAGCTGCACCTACACCCATCCTTGTAGATATTGACAGCAAGGTTTCAGACTTCAGTGAGGATGAGCCAGAGCCTGTAGAAGAGAATAGGCCGCATCCATGCTATGACCCCAGGTGTCCTGAAAAGGAAGTTCCTACAGAATTATCCAACCATGTTGCACCAAGTGCAGTCTTGCAGCCACTGCCACCTCATATGCGATCTGCCAGTCCACTGGGCCCCAAACGCACACCAACAGATGTGCTCAATGACATGAAGAACTGGGCCAAGTCTAAAATTGCCCAGATACCTAAGCCTCCTTCACTTCAGGAAACAGATCTTGGACACCAGAAATCCCAGATACTTGGACCTCCTCTTCTGCAGCAAACAGATCTTGGATACCAAAAGGCCCAGATACCTAAACCTCCTCGACTTCAGAAAGCGGATCTTGGATGCAGAAAGTCCCAGATACCTGAACTTCCTCCATGTCAGGAAACAGATCATGGTTACCAGAAATCACAGATACTTGAACCTCCTCTTCTGCAGCAAACAGATATTGGATACCAAAAGTCTCAGATACTTGAACCTCCACCAACTCAGCAAACAGATCTTGGATACCAAAAGTACCAGATACCTAAACCTCCTCGACCTCAGAAAGCAGATCCTGGATGTGATAAGCCCCAGATACCTGAAACTTCTACAACAAACCAAACCCAGCACACTGACACTCTGAAATCCAATAATCCCATCAGACCAACATCAGTACAGGAGTCCAGCCCACATCACATGCATCAGGCAGAAATTAACAATGATGGTGCTCTTCTCAAGATTCCTTCCATTTGTCTTACAGTGGAGGATCCATATTTTGGCCCAGATTCTCCTATGTCCACTGGGTCTACAGAGTGTACAGGAGCAGTACCCCTCAGCATGAAGAACCCTTGTTTCACTGGCCCCACTTTGGATCTTAAAAGTCAGAGTATTGAACTGCCAATGCAGGACAATAGTACAGGTGTGACTACACCTATGTCTGATGAGGACAGTCCTCCTCCTCTACCGGAGAGAACCCCAGAATCCTACATTCTGGCTGATGAAGAACGTCCACAAACTCTCACTCCTACTCTTCTTCAGTGCACTGATTCATCTCTACCGAAtgCCACAGATATGGGCAATATGGGCGATACGGCTGATAAGGGTGACACAGGCAATATGGGCGAGATGAGCATCGACCAGAACTTGACGTTGGTCATCCCACCCGATACTGTTTCAGCAAATGGAGGAGGAAGCCCTCCGTCTCCTGCACCGCCTTTGCCAGAAAGAACTCCAGAATCTTTTGAAATGCCTAATGATGAAGATTTATTACGGATTGCGGTACAAGAAAAGCCAGAGAAAACTGTGCTCAGGGTCGGGAAATCTTCTGAATGGTCTGGGAATTCAAACGTAGATGTACCAGACTTTAACAGGTCCTGGTCCAGGAGCAAGAGTTTAAGAAATAGACTGTCACTTAATGTTCCAGTTAACAACCAGTTAACGCCTTTTGCGCCACTTCACATACCATCACAAGAACCTTCAAAAAGTCTCACTCCTCCTCTCCCTGAACGCACACCTGATTCTTTTCTGTTGGAAGCTTCAGGGACACCAGCTCCTCTTACTCCTCCACTCCCTAGAAGAACCCCAGAATCTTATATTGTAGTCACAGAAGAAGCTCAGAGCAACAGCGCCTCCTGTCAGTCCGACACAGTCCAGCAAAGTCAGAGACTGGGCACCTCATCTGAGTGGGCAGGAAACTCCCAGCCCAGGACATTCCTAGAGGTGATGACCAGAAGCAAGAGTGTTAAAGTGAAAAGTTCAAAACAAGAGTGTTTATCTGTGGTTCCTCAGCCTGATCCAGATGTTGGGGCTACAGCAGAGTCTGTATCACCTAGAGCAGAGGACCAGATATCAGTGGACAGCAGACGTCCTGCAGTGGAGCAGCCTGAGAAGACATCACTACCCAAAAAGTCCAGGACCAAGAGTTTGAGGTTGTggaaaggaaaacagaaaaTGAAAGATGCTCCTGGGTCTGCTTCTGTTCCTCCAAACCATGGTGCTACTACAGGATTCGTATTTAGTTTTGGAACACGTTTTGGGAAACCCAAAGGACCGAGGAGTCAGCCAGAAACATGGGTGTAAATCAGACAGAACAGGAAGTGCCTCACAGCAGTCAGTGATGGAGTAACTGCCTGCCTACATCAGGTTCCcatgtgatgaaaaaaatgactgataTACAAGAAGACAAACGAGAGAACGAGATTCCTTAATGAATGGAGCTCAGAGGCTACAAGTGTTAATTAAACTGGCTTTTTGGTCAATAACTCAGGCGcttgctgaaagaaaaaaaaaaatcttgcaatCACTATATTTATTGTATAGTGGATTTTTTTGGGCTCAGGTGAAATCCCACAAAGCATTGCAACAAGTAGTGTCCAAACTATGTACCATAGTGAGTAGAGAATAACCTTAATGCATCTAAGACATATGATTTCCAGTCTGGGAGAAACCCTTCATGTGGCGAAAGTTTGACATGTTCTTCTATACATAGTACTGAAAGCTGAACTATAGACttccctgaactgaaatatttttctcttttgcatgtatcccAATCACAAGTTGTAGCATTTTAGAGTACctttaaaagtgaaaaggaaggAAATTTTAGATTTAAAGATTCTCTGTCTCAATAGTTACCACGAATTAAATACTTCgtggaaatgaaataaatcttaATTTATTCTTATGTATGAATTCGTGGccacaccttattaaaaaataaccacagtcACCTTAGCAACTCCATAACGGAGTAACGCTGCATACAagttagggttttttttttctttatgttacCCACTCATTCATCTGTACTCTTTTGCGTATTTTATTGCAGTTGTATCAAACAGCCATTTTTCTGTCTCCTTCTTTTTACATCTATATGGTACTgctttgtcaaaaaaaaaagttaaattaatgAGTGATTTTAGCTTTACTACTGATTGATCCTCTTCTGTTAGACAATCAGGATCAACCAAAGGACTGCTGCATTGCTCTGTAACATGTATGCTACTGTTTAGTCAGTCATTTGCACTATAACTTTATAACTTttcagtatatttatatatgacaGGGTTGTAGCAGTGTGGACTGTCTCAGTGACTACTAGCTCGTAGGGCACAACCAGACTGGTACGAGCTGGAAAGAAATTTCTAGCTGATGTCTGTATAAGCATACAGTTGATTcgtattttattcattgtgtgtgtaaatagcAATGTTCTCTTTTTTGACATGTATATGAAAATTAGAGGTGGAATGGTATGaataatttaaacataatttaatgCAGGAagtgttaaattattatattaattacaaTGCA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 22-like

GO: NA

KEGG:

id description
K18024 PTPN12_18_22; tyrosine-protein phosphatase non-receptor type 12/18/22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311885.1 True 4805 mRNA 0.44 29 19439436 19465336

Neighbor

gene id symbol gene type direction distance location
atp6ap1b LOC108275744 coding upstream 107462 19322799 ~ 19331974 (+)
itih6 itih6 coding upstream 129602 19295519 ~ 19309834 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding upstream 145235 19283497 ~ 19294201 (+)
si:dkey-78k11.9 NA coding upstream 163683 19273287 ~ 19275753 (+)
ccn5 wisp2 coding upstream 168214 19263417 ~ 19271222 (+)
zgc:158263 LOC108276042,LOC108441406 coding downstream 319235 19784571 ~ 19794997 (+)
zbtb48 zbtb48,LOC102780700 coding downstream 374375 19839711 ~ 19848662 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding downstream 434678 19900014 ~ 19965413 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 572085 20037421 ~ 20043667 (+)
ccnt1 ccnt1,ccnt2,LOC102787965 coding downstream 654614 20119950 ~ 20127658 (+)
G257287 NA non-coding upstream 33915 19403496 ~ 19405521 (+)
G257283 NA non-coding upstream 45533 19393537 ~ 19393903 (+)
G257255 NA non-coding upstream 78385 19357511 ~ 19361051 (+)
G257256 NA non-coding upstream 79696 19354727 ~ 19359740 (+)
LOC113530341 NA non-coding upstream 88588 19346311 ~ 19350848 (+)
G257609 NA non-coding downstream 394 19465730 ~ 19466227 (+)
G257608 LOC108276210 non-coding downstream 1356 19466692 ~ 19470918 (+)
G257623 NA non-coding downstream 15774 19481110 ~ 19481575 (+)
G257671 NA non-coding downstream 195302 19660638 ~ 19666585 (+)
G257710 NA non-coding downstream 268015 19733351 ~ 19735213 (+)
pkig NA other upstream 216877 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 505117 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2251059 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2314485 17071136 ~ 17124951 (+)
G256046 NA other upstream 2931056 16508025 ~ 16508380 (+)
G257622 LOC108276210 other downstream 12966 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 160193 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 925473 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1044908 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1437769 20903105 ~ 20907459 (+)

Expression


Co-expression Network