LOC117599258


Basic Information

Item Value
gene id LOC117599258
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21472718 ~ 21474842 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311891.1
GGGGTCCTCGCAGAGGCTCTCAGTCTTACAGGTCCCAAGAGCATGTATAAGTGCCGTGTCTCTTCTCTGGTGCTCAGTTACGTGCTGAACGACTGGTGAACTCGGAACCGGAAAGCGACAACGACGTTGGAAGACAAATAATCGGACACCGCAGAAGAATGGACCCGTCGGGATTCAGCTGGAGAGGTGTGATACCAGATAGAGAGCTGATGCTTCTCCAACTGATTCTCCCACATCAGACAAAGCTAACcagtgtgacactgtgtATTATGCAATCTGAAGATGTCAAGACAGCAGTCCTGCAGTTGTCAGAGCGACATCGCCAGAGGTTTCGCTCCTTGAGCCTCAGTGAGGTCGGCGACCTATTTGCATTTGCACAACAGCTCCAAGACCACTGTCAGAAGTGGTTGCTGGCTGAAGATTGTGATCCCAGAAGGATTGTGGAGCTTTTGGTAAAGGAGCAGTTTATCAACCAGCTTCCGGAACAGACCGCCCACTGGGTTCAGCATCACCAACCAGCAACACCAAACGAGGCCATCCAAATGGCAGAGAACCACCTGATGTCTCTTGTTGTCTCTCCCCTTAACATCTCCCCAAGCTGGGTACATTCGGTCAAGagTGCTGAACAATACACAATAGATCCCTCACACCACACTGAGATTATGCAGCTAGAGGAATCTGAAGATGTCAAGAGAGCCATCTCGCAGTTGTCAGAGCAACATCGCCAGGGGTTTCGCTCCTTGACCCTCAGTGAGGTCGGCGACCCGTTTACATTTGTACAACAGCTCCAATTCCACTGTCAGAAGTGGTTGCTGGCCGAGGATTGGGACCATAGAAGGATTGTGGAGCAGTTGGTAATAGAGCAGTTTATCAGCAAGCTTCCAGAAGAGACTGCCCACTGGGTTCGTCATCACCAACCAGAAACACCAAACGAGGCCATTCAGTTGGCAAAGAACCACCTGGAGTCTCGCTGTCTCTCCAACAGTGGCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311891.1 True 992 mRNA 0.51 4 21472718 21474842

Neighbor

gene id symbol gene type direction distance location
ednrab LOC108276021 coding downstream 168090 21297056 ~ 21304628 (-)
LOC113530756 LOC108276020,LOC108435576,LOC107101953 coding downstream 177945 21287614 ~ 21294773 (-)
wu:fy63c09 NA coding downstream 199707 21259533 ~ 21273011 (-)
LOC113530739 LOC108275468 coding downstream 253805 21212913 ~ 21218913 (-)
LOC113530510 NA coding downstream 281690 21189381 ~ 21191028 (-)
LOC117599277 NA coding upstream 19574 21494416 ~ 21496055 (-)
LOC113530264 scml2,LOC108275918,LOC107694433,LOC107752426,LOC107564407 coding upstream 153290 21628132 ~ 21671352 (-)
ftr92 NA coding upstream 354423 21829265 ~ 21835197 (-)
gpsm2l LOC108275742,LOC108435558,LOC107754905,LOC107697895 coding upstream 383370 21858212 ~ 21883246 (-)
ghrhrl ghrhr,LOC108275741 coding upstream 409823 21884665 ~ 21921592 (-)
G258700 NA non-coding downstream 97615 21374898 ~ 21375103 (-)
G258626 NA non-coding downstream 231658 21238036 ~ 21241060 (-)
G258596 NA non-coding downstream 305120 21153906 ~ 21167598 (-)
G258437 NA non-coding downstream 518866 20953626 ~ 20953852 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding downstream 569961 20901278 ~ 20902757 (-)
G258771 NA non-coding upstream 39805 21514647 ~ 21555460 (-)
LOC117599221 NA non-coding upstream 108873 21583715 ~ 21586639 (-)
LOC113530427 NA non-coding upstream 113587 21588429 ~ 21599129 (-)
G258940 NA non-coding upstream 274949 21749791 ~ 21750001 (-)
G258942 NA non-coding upstream 276563 21751405 ~ 21752452 (-)
trnaq-uug_7 NA other downstream 118021 21354439 ~ 21354697 (-)
G258580 map7 other downstream 303020 21168986 ~ 21169698 (-)
camk2n1b camk2n1,LOC107664141 other downstream 496388 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 604714 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 947254 20518425 ~ 20525464 (-)
fyco1a LOC108275732 other upstream 450402 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 541205 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 971188 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1486736 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 1717415 23192257 ~ 23240347 (-)

Expression


Co-expression Network