LOC113530519 (LOC108261257,LOC108270753)


Basic Information

Item Value
gene id LOC113530519
gene name LOC108261257,LOC108270753
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24351895 ~ 24370680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311958.1
GTGTTTTAGAGTGTCTGAAAGAAGTCTGAAAGAAgataaatgtacaaatttaCACCAAGACTGCAGGAAAATTAATTTATCtgttttcatcttcagctgatGGACCGCACAAAAAGCGCTTATAGGAGATTAGATGAAGTCAAAATGGATGCAAGTGCTCTACTTGTTTGAATTGTTTGTTTGGCGTTTTTCTCTGTGCAAGTACAGTGATGTCACCAGCAGAGGTcgccaaaaataaataaaaaaaattgctgaatAAGCGCTCTGTGCCCTAGCTgtacatatattacacatactGCATTTGATGTTTATACTGTGGCATATAAGTTTATACACTTAACTGGTTACATATGCTACTGTGCACAAATATTTACTACAGTTACCTTCTATGTCACAAGATCCCAACCCTGATCATGGAGAAACCCCTGATGTTaacattttagtgtttcccttctctaacacacccactgcacctcaggaagggctgttaattagctgattagttgaatcagtgTTAAGTTATGAAATGAACACCATCCAGGTGTTCACGTTCCGCATTCTCACACCGACAGGTTTTCCTGGTTTCAGATGGCGGAACTAGACCGagtttgttgttctttttcagtttaatcCCGAGATTAAGGAGCGAGTTTGCTGGGGTTTTTTCAGTTTAATCCCGAGATTAAGGAGCGAGTTTGCTGTTCTGTTTCAGTATAAACCGAGATTAGGGAGCGGTTTTGGTGGATAATAATGCGCTAAGGAAGGAGTCGTTAAACAGtaaccATTGTTAATTGTGGAAGAAGACATGACATCCAAAATGAATTCCTCCACTCAGGACCCAGAGAATTCTGAAAGGAAGAGATCAGAGTccccagaacccagctgtgtgtccatgaagagtgatcAGTCAATTCATGAACCTTTAAAAttcagagagggagagagttcTGCTGAGCTCAGAAAGAGATCAGagtcaccagaacccagctgtgtgtccatgaagagtgatcAGTCACTGCATGAACCTTTAAAATTCAGAGAGGGACTAGTTCAGGGATTACTTCAGAAAGCTATAGAGAAAGAATGTTCTACTGAGTTTTGTTACCAAAAGACGGGAGCAAGCAGAAAAGCGCAAAAGTTAAAGTCCATATTCAAGGAGCTGGAGCGAAAGTTCATCACTATAGTGCAGAAAGAGTTAGACAGATTCATGAAGTTACttagtccagattacccagaaTGCCCTGACAGTGAGAAGGATCAGAGTGATGTGAGAGGTGGagtgctgaagatcacactgcacatCCTGAGGAACATGAACCAGTCTGAACTCGCAAACACGCTAcagaacaAATTTCTCCCTGATTGTCGTCAAAAATTCAAGTCtagattaacaaaaaaatttcagaaaatCCATGAGGGAATCTCAGACCACGGAACTGCaacacttctgaatgagatctacacagagctctacatcacagagggagGAAGTGGAGACGTTAATactgaacatgaggtgagacagattgagacagcgttcaggagaccagcaacacaggagacacccatcaaatgtaatgatctctttaaagaaaaaaacaacagaactgtgctgactaaaggagtagctggaattggaaaaacagtctctgtgcagaagtttattctggactgggctgaaggaaaagcaaatcaggatgtcatcttcatgtttccacttccctttagagagctgaatctGATGAAGGAGAAAAGGTTCAGTCTGATggatcttcttcatcactttttctcGGAAACAAAGGAATTAAAAATGAGACATTATAATCAGTACAGGATGTTGttcatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgaggcttcactgatcctcagaaagaggagtacttcaggaagaggatcagtgatcagatcCTGGCCGATAAAATTATCACACACacgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgtacATACACTTcttgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccacaGAGAGTATCCTGgtactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtactcaggagtgtgtacccaaatcttcagagaggagtttgggcttcacctggagaaggtgttcagctttgtacatttGAGCGTTCAGGAGTTTCTTGCTGCTTTATATGTATTTCTCTGCTTCTTAAACAGCAGAAATGTGCTTCAAGAGCAAACTactggatttgtttttttcaagaAGTCAAAAATGTCTGATTTCCTGAAGATTGCAGTGGACAAGActttacagagtgagaatggacacctggatcTTTTCCTCCgtttccttctgggtctctcacgaGTGTCTAATCAGTCTCTCTTACGAGgtttaatgccacagacaggaagcagctctcacagcaaacaggaaacagtcaagttcatcaaggagaagatcagagAGAACCtctctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtccAAATTTACCTCAATAAAGGAGCACATAGTCGTCTCCATGGTGCCAGACTCTCTCCttctcagtggtcagctctggtgtttgtgttactgaactcagaagaggagctggatgagttcgatttgagtaaatatgacaaatcagaggaatgtcttcataggctgctgccagtgatcaaagcctccagaaaagctgtgCTGCGTGATTGTAATCTGACaggggaaagctgtagagttctgtcctcagttctcagctcaaactcctccagtctgagagaactgaacctgagtgagaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgagGCTGTGTAAATGCAGTATTACAGAtaaaggttgtgctgctctggtttcagctctgaggtcaaactcctcatcacacctgagagaactgaatctgaacaacaataatccaggagaattaggagtgaagctgctctctgatctactgaaggatccacactgtaaactggagacactacaGCTACATGGTTGTAGTCTGAAAGagaaaagctgtagagctctgtcctcagttctcagctcaaactcctccagtctgagagaactggacctgagtgagaataaactgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagatactgagGCTGTCTgactgcagtattacagatgaaggctgtgctgctctggtttcagctctgaggtcaaacccctcatcacacctgagacaACTGAATCTGAAATACAATAATCCAGGAAAGACAGGAATGAAGCTCCTCTCTGACCtgctgaaggatccacactgtaaactgaaGAAACTACAAACATAAATCTACATGGTAATGGATGTGTATTGGTCGAATCTGAGATGTCAAGCTATCAGATGATGTGATCAGCTGCAGTCTCCACTCTACTGAGGAGCTACATGAATCCAAACTGAAGAAAGCAGGTGATGAGGTGACCCCTCTTACCCACGACCCAACCTGCTGGGAAAACCTTTTCTGGAAACTTTATTCTCTCAGTTATAAAAGAATGATTTCTTTCACAAAAAGGAACTGGACTCTTATTATTCTCCTTAAAGGAGACACTAGAACTAATCTAGCCAGatacatatgattttttttctgtaaaatcatTCAACGGCACTTTATTACCCTTCTGATATCATAAACTGGGTTAAAGATTTTCTGTGTAGTGCGTTTTGATAAATTAAGACTAATTGCAAGCTTGCATTACAGCAGCTGGTATGTTGTAGAAGAACACGCTCACAGAGACAGCTACagctaaacacacatacagtcacacACTTGTGAATTCCGGGTTAAGTTAAATGCTGTGAACAGATATCTGCTTTTCAACAAATGTGAATGGCCATTTAATGGTATTAAGAAAGTTAATAACGTGACCTTCATGAAATACAATATGTCTGATTATGTGGTGCAATTTGATAAGCACCACTGGCTGTGGTTGCGTTCTAACTCAggatagatatactgtataataatgtataataatatatggtTTTGACAATCAATCTTGTTGCATGTTCATCAGATTTTTTCCATTACAGCAGAGAAGcaacttttatttacttttcatcAGTCCACTTAAAATTTGCACAGTTATTTTGAAGGATTTTATATAggtaaaaatgtttgaaatgtttattttatacgcCACTTAACTATAGATCATGTATACCATATATAAGATACATACTATTTATACAAAATAGTTTGATTATTAATGATTCAACCATGGATAAAAATCTACAATAAtctaaaatgtgtatatatttcagATCAGTTTATTTCTGGATGTTACGTACTTCTCTTAAATGAAACCTAATGTAAGTACAGTtcccaaaagtttacatacatctAGACTAAAGGCATTCAAACTAAAATTttatgttaccatacatttcctgtgttaagtcagtTAGGATATCTACTTTATTTTCCAAAAGTTTGGATTTCAAAACAGtatgatttatttcagcttttatatattatatcatattttagtgggtcaaaagtttacacactcTTTATcagtatttgttttcttttaattgcttgaacttgGGGCAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311958.1 True 5094 mRNA 0.41 12 24351895 24370680

Neighbor

gene id symbol gene type direction distance location
LOC113530540 LOC108275466 coding downstream 11732 24321672 ~ 24340163 (-)
nhsa LOC108275756 coding downstream 82520 24205026 ~ 24269375 (-)
LOC113530542 LOC108275757 coding downstream 149723 24191180 ~ 24202172 (-)
scp2b scp2,LOC108275753,LOC108440020,LOC104921750,LOC108246649,LOC102203975,LOC100698399,LOC106529297,LOC106928213,LOC103139825 coding downstream 187716 24161230 ~ 24164179 (-)
podn podn coding downstream 197407 24140115 ~ 24154488 (-)
LOC117599267 LOC108273545,LOC108268894,LOC108261292,LOC108270753,LOC108263117,LOC108264971 coding upstream 17132 24387812 ~ 24447327 (-)
LOC117599268 NA coding upstream 25449 24396129 ~ 24402716 (-)
LOC113530518 NA coding upstream 52345 24423025 ~ 24429005 (-)
LOC113530680 LOC108275515 coding upstream 89847 24460527 ~ 24468085 (-)
LOC113530682 LOC108275603 coding upstream 97416 24468096 ~ 24473922 (-)
G260581 tmem27 non-coding downstream 45225 24305229 ~ 24306670 (-)
G260548 NA non-coding downstream 125937 24213334 ~ 24225958 (-)
LOC117599232 NA non-coding downstream 211789 24136489 ~ 24140106 (-)
G260371 NA non-coding downstream 471567 23880087 ~ 23880328 (-)
G260369 c15h1orf52 non-coding downstream 476579 23874519 ~ 23875316 (-)
G260833 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 non-coding upstream 77878 24448558 ~ 24453499 (-)
LOC117599219 NA non-coding upstream 228431 24599111 ~ 24600250 (-)
G260858 NA non-coding upstream 245354 24616034 ~ 24618044 (-)
G260873 NA non-coding upstream 311145 24681825 ~ 24701043 (-)
G260885 NA non-coding upstream 322655 24693335 ~ 24694246 (-)
reps2 reps2 other downstream 35480 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 372200 23973365 ~ 23979695 (-)
G260310 NA other downstream 587732 23763674 ~ 23764163 (-)
e2f1 e2f1 other downstream 1034431 23308899 ~ 23317464 (-)
LOC113530288 vstm2l other downstream 1111548 23192257 ~ 23240347 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other upstream 3593 24374273 ~ 24386255 (-)
tent5ab LOC108275717 other upstream 130449 24501129 ~ 24508468 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 417010 24787690 ~ 24795423 (-)
G260947 NA other upstream 510278 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 590341 24961021 ~ 24977067 (-)

Expression


Co-expression Network