LOC117599268


Basic Information

Item Value
gene id LOC117599268
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24396129 ~ 24402716 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311961.1
CTGGTTTAAGATGGCGGAACAAGACCGAGTTTGCTGTTATTTTTCGGTTTAATCCCGAGATTAAGGAGCGAGTTTGTTGTTCTGTTTCAGTTTAATCCCGAGATTAAGGAGCGGTTTTGGTGGATAATAATGCGCTAAGGAAGGAGTCGTTAAACAGggttgcctattattattgttattctaaATTGTAGGGAAAAGCATGACATCCAAAATGACTTCCTCTACACAGCTGGACTCAGAGAATTTTGAAAGaaagagatcagactcaccagaccccagctgtgtgtccatgaagagtgatcACTCAATGGATGCACCAATAAAATTCAGAGAAGGACAGAGTTCTACTGAGCTCAGAAAGAGACCAGAGTCACCAGaccccagctgtgtgtccatgaagagtgatgaGTCAATGGACGTACCGTTAAAATTCAGAGAGGGACAGAGTTCTACTGAGCTCAGTGACCAAAAGGGTAGAGCAGACAGAATCAAGCAACCGTTAAAGTCCATATTCAAGGAGCTGGAGCAAAAGTTCATGACGGTAGTGCAGAAGGAGTTAGACAGATTCATGAAGTTACttagtccagattacccagaaTGCCCTGACAGTGAGAAGGATCAGAGTGATGTGAGAGGTGGagtgctgaagatcacactgcacatcctgaagaacatgaaccagtCTGAACTCGCTAACACACTACAGAACAGTAAGAGTTCTGGGTCATGGGAATTTCTCCCTGATTGTCATCAAAAATTCAAATCCCGATTAAGtaaaaaatttcagaaaatCCATGAGGGAATCTCAGAACATGGAACTGCaacacttctgaatgagatctacacagatctcTACATTATGGAGAGAGGAAATGGAGACATCAATactgaacatgaggtgagacagattgagacagcgttcaggagaccagcaacacaggagacacccatcaaatgtaatgatctctttaaagaaaaagacatcAGAACAGTGCTCACTAAAGGAGtagctggaattggaaaaacagtctctgtgcagaagtttattctggactgggctgaaggaaaagcaaatcaggacatcttcttcatgtttccacttccctttagagagctgaatctGATGAAGGAGAAAAAGTTCAGTATGATGAaccttcttcatcactttttcccggAAACAAAGGAATTAAAACTGAGACATTATAATCAGTACAGGATGTTGttcatctttgatggtctggatgagtgccgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgtgctgctgacaaacctcatcaaggggaatctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgtgtgtgtagatcaggtaacagaggtacgaggcttcagtgattctcagaaagaggagtacttcaggaagaggatcagtgatcagagcctggccaataaaatcatcacacacatgaagtcttcaagaagcctctacatcatgtgccacatcccagtcttctgctggatttcagccactgttctagagagaatgttgtgtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccctgatcctcagcagaccagagagagtatcatggcactgggaaaactggctttccagcagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcagagaagtgtcagtgtattCAGGAGTGTGTActcaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacatctgagcaTTCAGGAGTTTCTTGCTGCTTTATATGTATTTCTCTCCTTCTTAAAGAGTactggatctttttttttcaagaagtCAAAAATGTCTGATTTCCTGAGAAGTGCGGtagacaaggccttacagagtgagaatggacacctggatcTTTTCCTCCGTTTCCtcctgggtctctcactggagtctaATCAGTCTCTCTTACAAGgtttaatgccacagacaggaagcagctctcacagcaaagAGGAAACAGTgaagtacatcaaggagaaggtCAGAGAGAACCtctctccagagaaatccatcaatctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtccAAATTTATGTGAATGAAGGAGCATTTAGTCATCTCCATGGTGCCAGACTCTCTCCttctcagtggtcagctctggcgtttgtgttactgaactcagaacaggagctggctgagtttgatttgagtaaatatgacaaatcaGAAGAATGTCTTCAtaggctgctgccagtggtcaaagcatcCAGAAAAGCTGTGTGAGTGTTTTCATTCTGAATAGATTCgatttctatttaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311961.1 True 2519 mRNA 0.43 7 24396129 24402716

Neighbor

gene id symbol gene type direction distance location
LOC113530519 LOC108261257,LOC108270753 coding downstream 25449 24351895 ~ 24370680 (-)
LOC113530540 LOC108275466 coding downstream 55966 24321672 ~ 24340163 (-)
nhsa LOC108275756 coding downstream 126754 24205026 ~ 24269375 (-)
LOC113530542 LOC108275757 coding downstream 193957 24191180 ~ 24202172 (-)
scp2b scp2,LOC108275753,LOC108440020,LOC104921750,LOC108246649,LOC102203975,LOC100698399,LOC106529297,LOC106928213,LOC103139825 coding downstream 231950 24161230 ~ 24164179 (-)
LOC113530518 NA coding upstream 20309 24423025 ~ 24429005 (-)
LOC113530680 LOC108275515 coding upstream 57811 24460527 ~ 24468085 (-)
LOC113530682 LOC108275603 coding upstream 65380 24468096 ~ 24473922 (-)
elovl4b elovl4b,LOC108275555,LOC108439952,LOC107697898 coding upstream 74652 24477368 ~ 24486328 (-)
tcp1 tcp1 coding upstream 125574 24528290 ~ 24536074 (-)
G260581 tmem27 non-coding downstream 89459 24305229 ~ 24306670 (-)
G260548 NA non-coding downstream 170171 24213334 ~ 24225958 (-)
LOC117599232 NA non-coding downstream 256023 24136489 ~ 24140106 (-)
G260371 NA non-coding downstream 515801 23880087 ~ 23880328 (-)
G260369 c15h1orf52 non-coding downstream 520813 23874519 ~ 23875316 (-)
G260833 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 non-coding upstream 45842 24448558 ~ 24453499 (-)
LOC117599219 NA non-coding upstream 196395 24599111 ~ 24600250 (-)
G260858 NA non-coding upstream 213318 24616034 ~ 24618044 (-)
G260873 NA non-coding upstream 279109 24681825 ~ 24701043 (-)
G260885 NA non-coding upstream 290619 24693335 ~ 24694246 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 9874 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 79714 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 416434 23973365 ~ 23979695 (-)
G260310 NA other downstream 631966 23763674 ~ 23764163 (-)
e2f1 e2f1 other downstream 1078665 23308899 ~ 23317464 (-)
tent5ab LOC108275717 other upstream 98413 24501129 ~ 24508468 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 384974 24787690 ~ 24795423 (-)
G260947 NA other upstream 478242 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 558305 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 581263 24983979 ~ 25008193 (-)

Expression


Co-expression Network