zgc:158296 (LOC108275955)


Basic Information

Item Value
gene id zgc:158296
gene name LOC108275955
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11509502 ~ 11512493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311970.1
ATGATGTCTGATGAGTACTTAGTGGAGTAAaatagagatgatgatgatgatgatgactatgACGAGGATATGATGAAGATGCACCCCACTCCAACTCCACCACCACAGTTCTGCTCCAGCTCCCAAGTGTCCATAAGCCAAGGTGAAACAAGAGACCCCTATGGAGTCAACAACCACTTGAAGATGGAGTTTAGTGATGTTTTGGCCGAGCCAGCCTCTCCGCACAGTTATGAACGTGTTTGGGTGTACAGTAGCATTGGGTTTGAGTCAGCACGAATCTGGAGTTACCGCTGCCTCACGACACTGTTCGCAGTCCCTGTTTCCTGCCTCTCTGGCTGCCTTTTTGCACTGCTGGCCTGCTTACACATCTGGTGTGTGATGccgtgtgtacaggtgtgtcaTACCTGTTTGCCCTGCGTTAGGTCCCTGTGGATGAGTGTGGTGAATATCTTCATCATGCCACTCTGCGTGTCTGCTGCTCGCTGTTGTAGTGGAATGTATGTATTATTCTCTAATGAATGAGGAAGACAGTGAAGAAATGCACTCCATATATCAAAACAATCCTTTTTGCTTAATTCAGGCATACATACTTCATGACATTTAAGGTTCAGTGCACTTTCAGCACTTAAATACGTCTACATTGGAGTGAAATGAAtggaatataaacaatgtttaaataacCACTGGTCACTGTGTGGCTTGATATACCAAATATAATCAACCATAGTTAGTACAGCATATGTATGTTGATATATTGTTGGATATTATTGTTACACATCAACACAGCAACAAGaatccatttttcattttaaactttacacTTGATTTGTCTGAGTGTTCCGGATGATTCAGTTCCCCTGTTTGCCCTTCAGTGCCCATGTGCAAAATCCTGACATTTTCTCCTGTTGCTGCGTTTGGCAGCCTGTGTATGCTGAATCACCACGCGTTAGTTTATAACgttattattttctgttcatCAGGGTAAGGTAAATTTCACATTGCTTGTAATATAGTTTGTAATTAAATACATGCTTTGAAGCATAGAATGTTTTGTTGTCAGAGGTTTTATTGCTCAGTCATATGACGGATATCCAGTAACTCTAGCTTTCACCCTGTTTTCAGCGTCTCTGTGTAACTTAACCTAATGTTAAGTTAATGAGTTAATGTGTCAAGattaattaacaaatatatCCCAATTAGAACTGTGAATGCCTAgtttttcagacattttgttGTTTGGACAGtaagtaattttattattattattattattattattattattattattattattattattgtgtatcaTGTATGTCACAACTTGAAGTTTTGTTGCAGACATAAATAAACTATATAGCATGGCACAGTAAGTAAtctgtgttattattttaggtTACACGTCTCAGTTACACGCTAGGAAAACTTACTCAGAGAAAAAATGCACCTAGGAAAGTGGTTTACCTATAGAATGTTTCAGCTAGACTGCATTTATATCCTACTGTTATGGTACTAATATATCTGCTTCACAGTTTCATTCAATAAGTTTCATCCATACTTCATGTTTTTCACACTAAACCACAGACAGAACTGGTACTGGTAAAAAGGA

Function

NR:

description
PREDICTED: caveolin-2-like

GO:

id name namespace
GO:0000139 Golgi membrane cellular_component
GO:0005901 caveola cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311970.1 True 1609 mRNA 0.38 4 11509502 11512493

Neighbor

gene id symbol gene type direction distance location
trpc4apb trpc4ap,LOC107741324,LOC107737634,LOC107562468,LOC105890651,LOC107672047 coding upstream 55517 11444394 ~ 11453985 (+)
nsfl1c nsfl1c coding upstream 71857 11429838 ~ 11437645 (+)
bcl2l1 bcl2l1 coding upstream 139778 11344353 ~ 11369724 (+)
arfgef2 arfgef2,LOC107671990,LOC107737629,LOC108436330,LOC107562465 coding upstream 167976 11310969 ~ 11341526 (+)
pard6b pard6b,LOC108436329 coding upstream 207499 11279829 ~ 11302003 (+)
ikbkg ikbkg coding downstream 3896 11516389 ~ 11528319 (+)
ssr4 ssr4,LOC108275956,LOC108436301,LOC107671948,LOC107737640,LOC107741342,LOC107562474 coding downstream 18157 11530650 ~ 11533250 (+)
sephs3 sps2,LOC107560911,LOC108275954 coding downstream 21162 11533655 ~ 11542024 (+)
fam120c fam120c,LOC108436345,LOC107657034,LOC107741318,LOC107672004 coding downstream 88149 11600642 ~ 11620370 (+)
tafa1a fam19a1,fam19a1a,LOC108275576,LOC108436303,LOC107560881,LOC107741340,LOC107657002,LOC107563677 coding downstream 158905 11671398 ~ 11714810 (+)
G253248 NA non-coding upstream 46745 11461714 ~ 11462757 (+)
G253212 NA non-coding upstream 132882 11372995 ~ 11376620 (+)
G253210 NA non-coding upstream 137150 11370703 ~ 11372352 (+)
G253151 NA non-coding upstream 262640 11245898 ~ 11246862 (+)
G253152 NA non-coding upstream 264030 11244761 ~ 11245472 (+)
G253301 NA non-coding downstream 216547 11729040 ~ 11729292 (+)
G253329 NA non-coding downstream 270415 11782908 ~ 11784064 (+)
LOC117599271 NA non-coding downstream 284764 11797257 ~ 11799304 (+)
G253548 NA non-coding downstream 426586 11939079 ~ 11941237 (+)
LOC117599216 NA non-coding downstream 433839 11946332 ~ 11974544 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other upstream 1752 11483419 ~ 11507750 (+)
zgc:103759 LOC108276081,LOC108436299 other upstream 30126 11470051 ~ 11479376 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other upstream 94053 11392434 ~ 11415449 (+)
oard1 oard1 other upstream 272135 11231378 ~ 11237367 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 595906 10872029 ~ 10913596 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 82011 11594504 ~ 11640907 (+)
G253367 naca,LOC106571941 other downstream 379657 11892150 ~ 11900364 (+)
trim101 LOC108276180 other downstream 601129 12113622 ~ 12121372 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other downstream 628979 12141472 ~ 12143527 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other downstream 854120 12366613 ~ 12385996 (+)

Expression


Co-expression Network