mical1 (LOC108276121)


Basic Information

Item Value
gene id mical1
gene name LOC108276121
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17791380 ~ 17827959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311986.1
TGCAGctacgtgtgtgtgagcaaggtGCCGCCTTTAAACTCTGAAGCCGGAAGAGTTTGGCTATTTTCTCGGAGTCTTTCAGAAGTGCAGCTAGAACTGGAGAGCAGATAGTGTTGTTAAACCACTGAGAGGAAGGGTCAGCTGTTCTGGCAGTTTCTGAGTGTCTAAAAGAGGGTCTAAAAGAGGTCACTGCTGAACTGAGGCCATCCTACAGCATGACTGATCAGCAGGACCCTGTTAATTCAGGTCACGCCGTGTTTGACCGCTTTGTGGTCGCTCAGACGTGCAAAGAGGTTCAGCAGAATTTCACTGAGCTCTGTCGCCATCTAGAGTTAGATGTTAAGGATTACCGCCACTTTTACAGCAAGCTGAAAGAGAGTCTGAACTACTGGAAAGCAAAAGAACTCTGGCAGAAGATTGACAAGAGGGCAGCACACCCAGACTATGAGCAGGGCAAACCATGTGCCAAGACTAAGTGTTTAGTCCTGGGAGCAGGCCCATGTGGCTTGAGGACGGCCATAGAGTTGGCTCTTCTAGGTGCACAGGTGGTCTTGTTGGAAAAGAGAACATCATTCTCCAGGAACAATGTCCTGCATCTGTGGCCATACACCATCCGAGATTTACGTAATCTTGGTGCAAAGAAGTTCTACGGCAAATTCTGCTCTGGTTCTCTCGACCACATTAGTATCCGCCAGTTGCAGTTAATTTTGCTGAAGCTGGCTCTGCTCTTGGGGGTTGAGGTTCACACCGGAGTGACCTATAATGGTTTGGTTGAACCCCAGGCATCAGGAACAGGCTGGAGGGCTTTGTTGCATCCCGAGTCTCACCCAGCTTCTTCCTATCAGTTTGATGTTTTCATTTCAGCTGGAGGAGGAAGATTTGTACCTGATGGGTTTAAGAGAAAGGAGCTGAGAGGGAAACTGGCCATCGGCATCACGGCTAACTTCATTAACCACCGCACCGCAGCCGAGGCTCAGGTGCCAGAGATCAGCGGCGTGGCACGCATTTACAACCAGAAATTCTTTCGGGAGCTTCAAACAGAGATGGGCATTGATCTGGAGAACATAGTCTACTACAAAGATGACACTCACTACTTTGTCATGACTGCCAAGAAAAACAGTCTGCTGAAGAAAGGGGTCATCAAACAAGACTCTGCTAATGCAGAGCAGCTGTTAGCACTTTCTAACGTTAACGGGGAGGCTTTACTGAAATACGCATATGACGCTGCTGCATTTTCCACGGCCCACAAACTTCCTAACCTTGAATTCGCAAAGAATCACAAGGGAGAGGCAGACGTAGCCATGTTTGACTTCACCTGCATGCACCGTGCCGAGAACTCCTCGATGGTGATGGAGCGCAGAGGCAAGAAACTCCTCATAGGCCTGGTGGGAGACTGCCTGGTGGAGCCCTTTTGGCCCTTGGGGACAGGAATTGCACGAGGTTTCCTGGCTGCTTTTGACACTGCGTGGATGGTGAGGAGCTGGGGAAAAGGAATGCCACATATGCAGGTTCTGGCAGAGAGGGAGAGTGTGTATCAGTTACTATCACAGACCACTCCTGAGAACACGAGCAAGAACTACTCTGCCTACAGCATTGATCCGAGCACCCGTTACCCCAATGTGAAAGTGTCCTCCATAAAACCTACACAAGTGCAGCATCTGTATAATGTTGAGGACCACTCGGATACCAGCAAATTcagccaaaagaaaaaagatccattatgtaataaatatcaaGcTTCCCTGCGACGTGTGGTAGACCTGCTAAACTGGTGTCAGAAACACACGGCCTGGTGCGATCGGGTCAAGGTGAAAGACCTGAGTCAGTCATGGAGATCTGGCCTGGCACTCTGCGCCCTGATCCAGCACTTCAGACCCAAACTCATAGACGTGTCCACTCTGGACGAAAATAATGCTGCATACAACAACCAGGTGGCCTTTGACATTCTCCAGAAGGAGTTTGGCATCGCACCCATCATGTCTGCAAGTGATATTGCCTCTAGCAAGGAGATTGATCAACTGTCTGTGGTGCTCTACCTAACTCAGGTCCACAATGCTTTCAGTGAGACTCCCAAACCAGCAGAGCAGGCCAGCTCGAAGTCTGTTTCCTTAGCTAAAACCCGTTCTGCTGTCTTTTTCCTGAACAAGCTCAAGCACAACTCCCTCCAGAGACGCAAGGAGCGTCTGGCTgctgagagaaaagaaaaggaacgAGATatgaaggaggaagagaaaaagaaagatCTCGTGCCCACGGTGCCAGTGGCAGACGTAGGAAGCAGCGAGCTGTGTTACTTCTGCAATCAGCAGCTCTATGTGCTGGAGAGGGGCAGCGCTGAGGGCAAGTTCTTCCACCGCAGTTGTTTCACATGCCAGCAGTGTGGTACCACACTGCGCCAGGGAGGATACACCTTCCACGCCGACCGAGGGAGGTTTTACTGCGAGCAGCATTCCGAGGCAAAGGAGGAGAGTAAGGAGAAGAGAGAATTGGAGCAATCAGATCAATCTGCAGGTGCAGAGGATCTGACAAGGACACAGGGCAGTCACAATGAGCAGAGTCAAGAACAGAATGGGAAAAATGAAGCCAGTAAAAATGAGCACAAGGAagagagtgtgtttaatgtgactCCTCAGATGTGTCGCTCTGTAAAGAGAAAAAGCTCCTATAAAATATCTATAGATCCAGACTGTGATGAAACCACAGAGTCCAACATGTCCACAGAGCATGAGGACCAGCTGGTATTGAGTGGTGCCAAAGACGCCAATAATCCTGGCATACCTACAGAATTGGGTCCAGTAAGCCAGACACAGTCAAAGGACAATGATATCCAAAAAGGTGAGGAGTCTTCCTTTCCTGTCACCATCCCAGTGCCAGTGCCAGCGCCACGCGGTTCTCGAGTGCCTGTCCCTAAACCCCGCACCATCCATAACATAGTGTCCTCATCCACTGAAACTGAGAACCAAGATCCGACACCAGACCTCACTAGCTTCATATCAGTGCCAGTAACCATTCCTGAAAATGACGAGGACTCTCCCAGTGAATCCAAACCCAAGCTATCACTTAAGAAGCTCCAGTTGACAGCTGAGGAGAAAACACAGCTGATTGACTTTACCTGCAGCCAGGACTCAGACTCAGAGACACCGGCGTCTTCGTCATCTACATCCTCATCCTCCAGACCACAGGACGGAGGAGGAGCAGAGGAGGAGGGTTACTCGAGCGGGGGAGCATCGTGGGGCCACATTCGACAGAAAAGGCTTCGCCGCGGTTTGAGAAGGAAAGAGGAGGTGCAGAGAGAAAGTCAGCTTCAACAGGGAAGAGTCAGATCCAAGTTCTCGCCCTGGAACCTGTCTTCACCACGGCTGCAGCACCGCTTCAGTGTGCTACGCATCCAACCTGCAGCACTAGATTCAGACGATGAGGTCGATGGcgaagatgatgaagaagacGATGAAGAGAATGAAGATGATCTTACTCTGGAGAATTTTATGGATGGCCAGGCTGTACCAGTGAACCTATCTAAGGCAGAGAAACAGGAGCTGATGAAGATGAGGACTCTGGAGCGAAGGGCCAAGATGAGCGAACTTCAGCGCTTGCGTAAAGCTCAGTCTATCCAGAGGAGGCTGGAGGAGATTGAGGTGACATTTAAAGACCTGGAGGAGAAGGGAGTGGTGCTAGAGAGATCTCTCAGAGGACAGGCTGGTTCTGATGCCTCAACAATCATGATTGACCAGTGGATCGACCTGGTCCAGCAAAAGAATGCTCTGGTTTCAGAGGAATCTGATCTCATGGTGGCCTCTCGACAGCTGGAACTGGAGGACAAGCAGAGCATGTTGGAGCTGGAGCTACGTCGCTATATGGAGATAGAAGattctGAGAAGACTGCAGAGCAACGGGCAGAGGAGGATCAGATCCTACAGCAGATGCTGGAGGTGGTGGACATGAGGAATTCTCTTGTAGCCTTCCTTGAGGAGAAGAGGCTTaaagagatggaggaggaaCAGCTGGGCTCCTCACTGATGGAGAACAAGAGACTGTCTACTGCAGGAGCTCAGGTACACTGGGAatgagagagcacacacacgtacatagaGACTCTTGTCACCACGTTCTGCCCTTCAGCTTTTACATCTCAAACCAAAGACTTCAAAGTATACGAGCCTATGACTTGTTACTGTGTGCACTTGGACACACTCAGGATCCATGGCTGGAGATTCAGTGTGTAGAGGGGTTTAAACTATCAAAACATATACTAAGGTTATCCATGAAAGACACCTGAGATTATTCCAGAAAACTCTGGAACTTTTATTATGAGCACCCAAGCCTTCACTGCCCAGTCACAGCCTAGAGAGAGACCAGTAGAAGCCCCATCATGTAGCTAGactac

Function

NR:

description
PREDICTED: protein-methionine sulfoxide oxidase mical1-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311986.1 True 4384 mRNA 0.50 25 17791380 17827959

Neighbor

gene id symbol gene type direction distance location
camk1gb camk1g,LOC108425536,LOC107590467 coding downstream 12530 17766209 ~ 17778850 (-)
g0s2 g0s2 coding downstream 34825 17755592 ~ 17756555 (-)
taf8 taf8,LOC107594013,LOC107671856,LOC107723763,LOC107549030 coding downstream 37036 17747282 ~ 17754344 (-)
LOC113530575 NA coding downstream 55636 17730712 ~ 17735744 (-)
LOC113530577 NA coding downstream 564646 17208885 ~ 17226734 (-)
src LOC108276199,LOC108425539,LOC107590469,LOC107754892,LOC103385228,LOC107558752,LOC107738191 coding upstream 4442 17832401 ~ 17884017 (-)
nfatc2a nfatc2 coding upstream 117728 17945687 ~ 17973544 (-)
LOC113530442 atp9a,LOC107697879,LOC107664207,LOC106567116 coding upstream 157548 17985507 ~ 18032167 (-)
sall4 sall4,LOC107735783 coding upstream 204497 18032456 ~ 18039804 (-)
zfp64 zfp64 coding upstream 247359 18075318 ~ 18085292 (-)
G256689 NA non-coding downstream 473 17790641 ~ 17790907 (-)
G256623 NA non-coding downstream 57331 17733806 ~ 17734049 (-)
G256622 NA non-coding downstream 58917 17732097 ~ 17732463 (-)
G256613 NA non-coding downstream 69447 17721723 ~ 17721933 (-)
G256598 NA non-coding downstream 91983 17699198 ~ 17699397 (-)
G256929 NA non-coding upstream 520884 18348843 ~ 18349692 (-)
G257322 NA non-coding upstream 825134 18653093 ~ 18653315 (-)
LOC113530357 NA non-coding upstream 981104 18809063 ~ 18863122 (-)
G257458 NA non-coding upstream 1106938 18934897 ~ 18936391 (-)
G257471 NA non-coding upstream 1111523 18939482 ~ 18939782 (-)
dazap2 dazap2 other downstream 920216 16852928 ~ 16871164 (-)
si:ch211-210c8.6 NA other downstream 952731 16787801 ~ 16838649 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other downstream 1096349 16647823 ~ 16695031 (-)
znf512b znf512b,si:dkey-256k13.2 other downstream 1971139 15658336 ~ 15820241 (-)
LOC113530775 NA other downstream 2474015 15258485 ~ 15317365 (-)
kcng1 kcng1,LOC107711602,LOC107590496,LOC107738482,LOC107558732 other upstream 56284 17884243 ~ 17913277 (-)
znf217 znf217 other upstream 457527 18285486 ~ 18300687 (-)
LOC113530839 LOC108275928,LOC108425553 other upstream 681189 18509148 ~ 18531252 (-)
lrp1ab lrp1,lrp1ab,LOC108425568,LOC107593902,LOC107673053 other upstream 1108618 18936577 ~ 19064582 (-)
LOC113530570 NA other upstream 1542728 19370687 ~ 19387041 (-)

Expression


Co-expression Network