LOC117599273 (ccdc171)


Basic Information

Item Value
gene id LOC117599273
gene name ccdc171
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25069915 ~ 25072941 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312013.1
GTGAGCGGAAGTGACGCCATCGCGTTTGTTTCGGAAGCGAAAACGGCGTCAGATTTAAACGGACTACATTTTCCAatttcAGTGGACATTAGCAGGACACTGGGCTCATGTCTGAGAGCCGGCAGACGCAGCGAGGTGACGAGCGAGCACGTGACAGGGCGAGACGCAGGGACAGTGGACAGAGTAAAGCGTCTCTGCGTGCGTCTCACCCTCGCACCGTGAGCCGCGCCGCTCAGGGGGATCTGCAGGAGATCAACAGGCCGAGAGAGGTGATTGGTCAGCTGCAGACTGAAGGGCGGGGCGTTGACAAAGAGGAGGAGCTGAGATGGAGGATCAACCAGCTGGAGAAGGACAAGCTCGAGCTCAGCTCCAAGTACAATCAGGAGgtgtcgGGTTACGAGGCTCAGCTCACTCGCTGTCGTGCTCTGCTGGAGAAAGGAGAAGCTCAGAGACAGACACTCGAGTACGAACTCGCTGTGATGAAAAGAGACACAGCTGCTCAGAAAAGTCTCTCTGAGGACAAGATGGCCAGCCTGATCACACACAACCAGCAGCTGGaggGCCTCAATGCGGAGCTGCGTCAGAGGGCCTCTGATCTACAGAGAGCTTTGGAGATCACGCAGCAAGCTCGGTATGATGATGAGAAGAGCCTCCAGGCAGAGCTGCGTGAGAGGGACCATCTGATTCACAGCAttagcacagagagagagctgctgcAGGAGGAGAACAGACGCCTGGACTCACTGCTGCAggagcaGAAAGACACACTGCAGGAGCTGAAGGACAGGATGGACAGtgtgcagagagacagagagcgagacgCTGAGAAGCTCAAAGTGAGGACGGCTGAGCTGAAGAAGAGTATGGAGAGTGAGGAGATGATGAAGAAGGAGGTGGAGacagCCGTACAGAGAGTAAAGGCTctggaggagtgtgtggagtCAGAGAGAGCTGCTCACCTGGAGTTCAAGGTCAGCGCTGAGGTCATTCAGctgcggCTCAGGGATGTGGAAGCGGCTCTGTCAGTAGAGAAGAGGAATCAGGCTGAGGCTGCGTCCAGTCTGGAGCTGCTCAAACACAGATCTGGAGAAGtggagagagcacacacacgcGAGAGAGAGCGCGCtgacaacacacaacacacactgacactgtaa

Function

symbol description
ccdc171 Orthologous to human CCDC171 (coiled-coil domain containing 171).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312013.1 True 1157 mRNA 0.56 8 25069915 25072941

Neighbor

gene id symbol gene type direction distance location
hmgb2b LOC108276448 coding upstream 23769 25043358 ~ 25046146 (+)
LOC117599307 NA coding upstream 56644 25011096 ~ 25013271 (+)
LOC113525303 LOC108275832 coding upstream 62098 24999945 ~ 25007817 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding upstream 188275 24870669 ~ 24881640 (+)
txk LOC108275609 coding upstream 201083 24856580 ~ 24868832 (+)
G260813 sh3gl2,LOC108276379,LOC107568960,LOC107730358 non-coding upstream 9683 25055148 ~ 25060232 (+)
G260812 anp32b,LOC108275503,LOC108412630 non-coding upstream 16396 25047551 ~ 25053519 (+)
G260779 NA non-coding upstream 40954 24970399 ~ 25028961 (+)
G260796 tfr2,LOC107709213,LOC107673155,LOC107579318,LOC107676171 non-coding upstream 52976 25015220 ~ 25016939 (+)
G260759 NA non-coding upstream 86112 24936921 ~ 24983803 (+)
ddx58 ddx58 other upstream 433786 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 616377 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 800648 24268577 ~ 24269267 (+)
G260415 NA other upstream 1037191 24032227 ~ 24032724 (+)
G259993 NA other upstream 1680601 23387538 ~ 23389314 (+)

Expression


Co-expression Network