edn3b


Basic Information

Item Value
gene id edn3b
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14177226 ~ 14197008 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312019.1
CGTCAGTTCAAGGCATGCCATAAATCAGGAGTCCAGAATCATCATGACAGCATGATCGAGTGATCTACAAGACCTCTAAAACCACTGGCTGGATAAGAAGTGAAGGGAGATTTCAGCTGGTCCTGGGCCTGGGTATAAATCAAGGAGCTCCTTTTCTTCTAGCTGAGGAAAGGAGGGATATTGCGCATGGAAACTTTGGCGCACGCGCGCGCTCTTGTGCACAGCGAGGCGCCAGTGGCAGCATGCTCCTCAGAGTCCGGCTTTTAGTGCTTCTGGGTTTAGCAAACGTTTTCGCAGAAGGAAAACCATCCTTCTGCCTGAAAAGCATACCATCATTTTCACTTTCCTCTTCTGCTGGTTCACTCAGTGGACGCAGTACCACAACAATGGTGTTCACTAAAGATTATCAGCCTCGTCACAGATCTAGGCGGTGCACCTGCTTCTCCTATAAAGACAAAGAGTGTGTCTACTACTGCCACTTGGACATGATATGGATTAATACACCACAGCGTACAGTTCAATATGGCATGTCAAGCTCTTGGCGCGTCAGACGCTCCAGTGGCACTGCAGGGGCAGAGGTTCAGCGCTGTACCTGCACAATCAAGAATGATACACAATGTCACACCTTCTGTGAATATGTTCAAGAAGAGTTTTCCAGaGCCTCAGTAGGAGCCAGACAGTGAAGCTCTTGATCATTCTTAGCTTTGGGACCCCACTGCTTCTGAAATCACTTTACTGACTGGCCTACACTTCCATGACTCAGTTTACCCTTCTTTCAGCAGAAGTATGAAGTAAAACTTTCTGAAGGCTGTCAGTTCTCAAGTGAGGACCTGAACCTTACTTATTAATTTGAGTCCTGGACTAATGTAATGGACTGTTACTATTTTAAGTGGGCTGAAGTGTTCCAGGAAAGGATGTGACCCCAGAATCCACCattttatgatttgttttttgtttctgttgttgttgttgttgttgttgttgtttatataCTGGAGCATCAACACTTATTTTAGTGAAAATATCTGAAGAGAATACTCAAAAACCTTTGAAAGTGCATAACTGAGTTGTTCAAGTAACTTGAATGCTCTTTTCCTTAAATAATATTTCTCCATCTGCCATGATTCATGAAGGAGTATATTTGGgtgattatttttaacagtgATTGTGAATGACAGTAAGCTGTTATATGAAACTGTTGCATTTGAACAAAATATTAACAAGCAGACTATAAAGATCATATTGTTAACTGGACATTACCAGATATAGTTCATATAGTACTCTTAAAGAACTTCTGTAAAGTGACGGTgccttaaaaaatgaaatgagaagtaaaaaaataattattagattgagtttttttaaaccaaaacttAAACCAAATCATAATTTGTTGTGGAACACTAAATAAATTCACTGAAACACTAAATAAATTCGATTAGGTATGCTGGcatgcagttttctaaggaaattgGCTGCTAGGGTGTTTCAGGCTTCTTGGAAAATTTGGTACAGTTCTTGTGTCTCAGCAGGTAAAATCCCAGACAGCCACAGTGATGCTTTTATCAGAAATATGGTCTGTTACTTAATATGGTAACATTTTTTTGAAGGGTGTAGAGGAGTGAATCATTGAAAAATctgttttccttctttcctaCTGCCACGCTAATGtactcactgactcactttcAGTAATTGTTTTATGCTGTTCATGGTggatcgcagggcaccatgcacacacacattcacacactcattcacatctaggggcaatttagtgtacacaatccatctactggcatattttggcgaggtgggaggaaactagagaaacCCAGAAGAAATCTACACTGACACATGGAGAAAATgcagagaaactccacacagacagtaacctgagcccTGGAactgggaaccctggagctgtgaggcgacaAGGCTACATATTCACACCGAGGGGCAATTTATTGTAGCCTATCAACCTGTTTgcaggaaaccagagaacctgatggaaacacacatgaacagaaTATATTATgggaatatacagtattagcTATACATGTAACTGTTACTTAGATACATTGACACCAGATAAAGGGTTGTAGTCCAAGGTCAGTCCAAATAGCTTTGCTTTTACTAGCACACATTAGGAAAAAGTGGATGGCAACTGGTATGGGCAGCAACAAAACCCGCTTGTGCATTAGGTGAACCAGAGGTACTAAAATATAGTTGTATGCCTTTAATATGTATCgtttttacagatatttttgGTAAGTGGAAGAAGTAGACGACATCAAAAATGCGTCTAAGCTTTAGAAAGAAATTTAATAATTGCATACAGAGAGAGTAATGCTGATGAACTTAGCATGTTATGGCCACAAGCTGTAAGAGCATATTTTGGCCATAATAGCTTCAGTGTGTCTTGGCATAAATTCTGCatgtctctggaactgtactggagtgacaaacaccattcttccaaaagatatttccTCAATATGGATGATGGTTCAGAGCATTATCTAACAAAATCTCCTATAGttgttcaactgggttgagagCTGGTGACTCTGAAGGCTATAGCATATGATTGACATGATTTTCATACTATTTTCATAAAGACCACTCCTATCAGGATAAAAATGCATcttcataggataaaggtgatcagtcagaataactttgtattgatttgcaatgACTCACTGCATAACAAAGCCATCATGTTTTCCCCTTTAATCTGTCTGTATAATTCATCTGTATGTGTTATTGGGTAATATTTATCCTTTAGTTACACATAGTAGTAGTCTAACTATTACAATAAGTTTTGTTTTGGGCCTGTGTAAAATGCCACGCAATTCatcattgtattatttttgtcattgtatTATCatcattgtattatttttgtcattgtatTATCAtcattgtgcatttttattctGCTCAAGCAAACACCTCTCAATTACTTGTTTcttggcataagaggaatagtATATTCCCTTGATACAATATTTTACAGACAATTAAACTGcaaaatgtaactgaaaatTGATCTTGCAGAAGTCAGCAGctgcttttattatttctggAATTGTCCAACCTGACTGTCTGTTGAGAGAAATGCCCTTTGTGCCCTTATTGATCCAGCAACCACAACACAGCCCTAAAGCATCACTGATCTGCCAccatattttacaattttacacacatttctgtgtatGCAGCCCCCTtttgattttggtctcatctgaccacagtaCACCACTGTAGTTCCAATGACACATGGTGAAGTTCAGACACTGCTTTTTGTGAGATGCTCTCAGGAAGAGCTTTCTTGCAGAGATCCAACCAGCTTGCTGTTATGAAACTTATGAAACCacaaaaatcaattaaaagaTCATTCTAAAA

Function

NR:

description
PREDICTED: endothelin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312019.1 True 3414 mRNA 0.39 6 14177226 14197008

Neighbor

gene id symbol gene type direction distance location
ttll9 ttll9 coding downstream 5122 14162526 ~ 14172104 (-)
ppp1r3da LOC108275498,LOC108438215 coding downstream 23594 14151427 ~ 14153632 (-)
pigt pigt coding downstream 91172 14072159 ~ 14086054 (-)
haus8 haus8 coding downstream 116779 14055402 ~ 14060447 (-)
sac3d1 sac3d1 coding downstream 123054 14050444 ~ 14054172 (-)
chl1a LOC108276120 coding upstream 81086 14278094 ~ 14322302 (-)
ppp4r2a ppp4r2,LOC108276138,LOC107551500 coding upstream 278667 14475675 ~ 14484107 (-)
tns2a tns2,LOC107681375 coding upstream 376884 14573892 ~ 14614655 (-)
eif4ba eif4b,eif4ba,LOC107666323 coding upstream 427053 14624061 ~ 14646305 (-)
LOC113530599 krt18,LOC107681396,LOC107727028,LOC107551541,LOC107666358,LOC107568050 coding upstream 472808 14669816 ~ 14673966 (-)
G254567 NA non-coding downstream 476821 13700009 ~ 13700405 (-)
G254600 NA non-coding downstream 480606 13692797 ~ 13696620 (-)
G254599 NA non-coding downstream 511753 13664893 ~ 13665473 (-)
G254587 NA non-coding downstream 562563 13614428 ~ 13614663 (-)
G254568 cables2 non-coding downstream 586256 13590500 ~ 13590970 (-)
G255020 NA non-coding upstream 333817 14530825 ~ 14532588 (-)
G255306 NA non-coding upstream 678636 14875644 ~ 14878506 (-)
G255403 NA non-coding upstream 983378 15180386 ~ 15180640 (-)
G255385 NA non-coding upstream 985149 15182157 ~ 15227960 (-)
G255435 NA non-coding upstream 1135118 15332126 ~ 15332451 (-)
LOC113530423 LOC108276099 other downstream 26645 14128963 ~ 14150581 (-)
oprl1 oprl1,LOC107681404,LOC107727003,LOC107666560 other downstream 893341 13251140 ~ 13283885 (-)
plagl2 plagl2,LOC107690855,LOC107681868,LOC107559482,LOC107747490,LOC107558237,LOC107707758 other downstream 1242918 12897474 ~ 12934308 (-)
ptk6b LOC108276246 other downstream 2009431 12155728 ~ 12167795 (-)
LOC113530816 LOC108276066,LOC108276064,LOC108276065,LOC108275619 other downstream 2317880 11838796 ~ 11859346 (-)
G255071 krt8,LOC108411779,LOC100304655,LOC107551542,LOC107681390,LOC107705700,LOC107666368,LOC102212080,LOC102292851,LOC102776167,LOC101486263,LOC103367855,LOC107391340 other upstream 502264 14699272 ~ 14704270 (-)
LOC113530775 NA other upstream 1061477 15258485 ~ 15317365 (-)
znf512b znf512b,si:dkey-256k13.2 other upstream 1461328 15658336 ~ 15820241 (-)
fam50a fam50a,LOC107671832,LOC107715033,LOC107594034,LOC107707036 other upstream 2450815 16647823 ~ 16695031 (-)
si:ch211-210c8.6 NA other upstream 2590793 16787801 ~ 16838649 (-)

Expression


Co-expression Network