LOC117599277


Basic Information

Item Value
gene id LOC117599277
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21494416 ~ 21496055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312021.1
CAGCCAGCAACCACTTCTGACAGTCGTCTTGGAGCTGTTGTACAAAGAGGAATGTGCTTCCGACCTCACGGAGGGTCAGGGAGCGAAACCTCTGGCGATGTTGCTCTGATTGCGAGACGGCTTTCTTGAGCCTTTCAGATTCCTCTCTGTGCATGAAGCTCTGGAGCCTGTGTTGGGTCTCTGCCTGGGCTTGTATCAGGACCTCCAGACGCTGCATAATCTCAGTGTGGTGTGAGGACTCCATTGTGGTGAACGTAGAGGTGCTGGAGAGAACGAGAGAGGTGCTGGATTTTTAGAACGAAACTTCGAGCTCTGTGTTTTCACCCAGCACTTTGTACCAAAAGAAAATTCAGCAGGCAAACGAGTATAATCGAGGTGAAGGAGGCCACGATTTGAAGATAAGTCGGGAGAAGCTTCTCTTTCATTGGTGTGATCCCTAACCCGCTTTATCTGAGGCTATATAACTTGTGAATCTTCTCCGGTACTCAGTGGCGCAGCTGGTGAACTAACGAACGTGGAAAACAGCAACGACtttggaagagaaatgattcgAGACCTCTGAACAAATTTCCACTGGAAATCTGTCTTATTCGCTCGCGCCTCGctctgaattgaattgaattgaattgatttaaaCTGATTTCAAATCGTGGCCTCCGGCGCCACGACGATATAAACAGCTCCTTCTCCGCGATTATACTCATTTGCCTGCTGAATTTTCTTTTGGTACAAAGTGCTGGGTGAAAACACAGAGCTCAAAGTTTCGTTCTAAAAATCcagcacctctctctctctctacgtGCTTACGTTCCCAACTGAGTGCAACACAATACACCACAATGGAGCTCTCACACCACACTGAGATTATGCAGCTAGAGGAATCTGAAGCTGTCAAGAGAGCCACCTCACAGTTGTCAGAGCAACATCGCCAGATGTTTCGCTCCTTGACCCTCAGTGAGGTCGGCGACCCGTTTACATTTGTACAACAGCTCCAATTCCACTGTCAGAAGTGGTTGCTGACTGTGGATTGGGACCATAGCAGGATTGTGGAGCAGTTGGTAATAGAGCAGTTTATCAGCAAGCTTCCAGAAGAGACTGCCCACTGGGTTCGTCATCACCAACCAGAAACACCAAACGAGGCCATTCAGTTGGCAAAGAACCACCTGGagtctctcgctgtctctcccACAGTGGCTGAAGGCGAGTTGTGTGCATGGGGATTTTCACAAATATCCACTGTGCCAGTCATGATCAGTTTCTGGGGACAAAACCATGTCCAGGCAGTGGTTAGTCCTGCCATAAACCATCTGCTGATTTTGGATACAAAATTGGCCTGATTTCCAAGAACTTTTTGTAGAGTTTTTGTAGTGGATGGATTTCTCAATTTACACTTCATGTCTTTGATCTGTACTACTGTGATTCGCCAGCTTCGATGACCACACTTGATATCACAGCAttatctgtaatctgtaattgACTATGATTTTCTTGTGTGCAGGCTTTGCCTATTTTGTTATTAAGTGGTCTGTATTTTGTTGGTTCttcttattaataaaacaaaatattaatatgtgatAGATTTCTGAAATCTTCATGGTGATGTCTATATGTAAAGCAAagtttttatatcatattctaGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312021.1 True 1640 mRNA 0.45 1 21494416 21496055

Neighbor

gene id symbol gene type direction distance location
LOC117599258 NA coding downstream 19574 21472718 ~ 21474842 (-)
ednrab LOC108276021 coding downstream 189788 21297056 ~ 21304628 (-)
LOC113530756 LOC108276020,LOC108435576,LOC107101953 coding downstream 199643 21287614 ~ 21294773 (-)
wu:fy63c09 NA coding downstream 221405 21259533 ~ 21273011 (-)
LOC113530739 LOC108275468 coding downstream 275503 21212913 ~ 21218913 (-)
LOC113530264 scml2,LOC108275918,LOC107694433,LOC107752426,LOC107564407 coding upstream 132077 21628132 ~ 21671352 (-)
ftr92 NA coding upstream 333210 21829265 ~ 21835197 (-)
gpsm2l LOC108275742,LOC108435558,LOC107754905,LOC107697895 coding upstream 362157 21858212 ~ 21883246 (-)
ghrhrl ghrhr,LOC108275741 coding upstream 388610 21884665 ~ 21921592 (-)
cc2d2a cc2d2a coding upstream 472559 21968614 ~ 21992840 (-)
G258700 NA non-coding downstream 119313 21374898 ~ 21375103 (-)
G258626 NA non-coding downstream 253356 21238036 ~ 21241060 (-)
G258596 NA non-coding downstream 326818 21153906 ~ 21167598 (-)
G258437 NA non-coding downstream 540564 20953626 ~ 20953852 (-)
G258427 cptp,LOC108433359,LOC107599683,LOC107697856,LOC107706969,LOC107664144 non-coding downstream 591659 20901278 ~ 20902757 (-)
G258771 NA non-coding upstream 18592 21514647 ~ 21555460 (-)
LOC117599221 NA non-coding upstream 87660 21583715 ~ 21586639 (-)
LOC113530427 NA non-coding upstream 92374 21588429 ~ 21599129 (-)
G258940 NA non-coding upstream 253736 21749791 ~ 21750001 (-)
G258942 NA non-coding upstream 255350 21751405 ~ 21752452 (-)
trnaq-uug_7 NA other downstream 139719 21354439 ~ 21354697 (-)
G258580 map7 other downstream 324718 21168986 ~ 21169698 (-)
camk2n1b camk2n1,LOC107664141 other downstream 518086 20973397 ~ 20976330 (-)
LOC117599256 LOC103359731 other downstream 626412 20829388 ~ 20868004 (-)
nfe2 nfe2 other downstream 968952 20518425 ~ 20525464 (-)
fyco1a LOC108275732 other upstream 429189 21925244 ~ 21954662 (-)
cpeb2 cpeb2,LOC108276376 other upstream 519992 22016047 ~ 22048388 (-)
G259306 LOC108275814,LOC108411446 other upstream 949975 22446030 ~ 22449427 (-)
si:ch73-217n20.1 NA other upstream 1465523 22961578 ~ 22980986 (-)
LOC113530288 vstm2l other upstream 1696202 23192257 ~ 23240347 (-)

Expression


Co-expression Network