LOC117599278 (anp32b,LOC108275503,LOC108412630)


Basic Information

Item Value
gene id LOC117599278
gene name anp32b,LOC108275503,LOC108412630
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25047620 ~ 25053567 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312022.1
CGCGGCCGCAGGAGGCGCTGCAGAGCtgcagagagaagagaagagaagcagaagaagaggCTGAGCTTCATGTTAAACTCGTGTGATTGTGTGCGTTTCTCTGCTGCTTCACTCTCATCTCACACTAAACTCGCTTTATTCCTCATTTATTCCTCACAACATGGACATGAAGAAGAGGATTCACCTGGAGCTGCGGAACAGGACGCCGTCAGACgtgtgtgagttGGTGCTGGATAACTGTCGGTCTGATGAAGGGAAGATCGAGGGTCTGACATCCGAGTTTGTGAATCTGGAGTTCCTCAGTCTGATTAACGTGGGTCTGACGTCGATCTCCAACCTCCCCAAACTGCCCAAACTCAAGAAGttggagcTGAGTGATAACCGGATCTCGGCTGGTCTGGAGATTCTGGCGGAGAAGCTGCCCAACCTCACACACCTCAACCTGAGCGGCAACAAACTGAAAGACCTGAGCATGCTGGAGCCACTGaggGATCTGCCCCGTCTAAAGAGTCTGGACCTGTTTAACTGTGAGGTCACGACCCTGGATGATTACAGGGCGAGTGTGTTTAAGCTCCTCCCCCAAATCACCTACCTGGACGGTTACGACCCCGAGGACCGAGAGGTGAGCGACTCGGACGCAGAGGGAGGTGacgaggatgaggatgaagTGAActcagaggaagaggaggatgaggatgaagatggagaggaagatgaggacgaggaaaatgatgatgatgaggaggatgaggatgaagaggcGAGTGGAGATGAgGAGGAAGACTCGGGtcaggaggatgatgaggatgacgatgatgaagatgaggaggaagATGAGGACGAGTGTaaaggagaaaagaggaaacGAGACCctgaggatgaagatgatgatgaggatgatgattgAGTTTcgtgttttgtgtgtgcgtgtatcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcagagagacgtgtgtgtgtgagatgagttTTAATGTTAGATCACACTGaggtgttatttttttaaatcccactcaGACCCCATGttgaagttcttttttttttttttatacatttgt

Function

symbol description
anp32b Predicted to enable histone binding activity. Predicted to be involved in regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; hematopoietic system; nervous system; optic vesicle; and ventral mesoderm. Orthologous to human ANP32B (acidic nuclear phosphoprotein 32 family member B).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312022.1 True 1088 mRNA 0.50 7 25047620 25053567

Neighbor

gene id symbol gene type direction distance location
ctc1 NA coding downstream 6152 25028795 ~ 25041468 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 21530 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 65322 24977894 ~ 24982298 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 87602 24932584 ~ 24960018 (-)
LOC117599306 LOC108275826 coding downstream 118234 24921918 ~ 24929386 (-)
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding upstream 3351 25056918 ~ 25067948 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 52141 25105708 ~ 25111538 (-)
G260926 NA non-coding downstream 1327 25043448 ~ 25046293 (-)
G260962 NA non-coding downstream 72313 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 173873 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 182730 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 317077 24730292 ~ 24730543 (-)
G260976 NA non-coding upstream 19144 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 35072 25088639 ~ 25089918 (-)
G260972 ctc1 other downstream 5025 25040791 ~ 25042595 (-)
si:ch211-149b19.4 LOC108275830 other downstream 39427 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 70553 24961021 ~ 24977067 (-)
G260947 NA other downstream 164475 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 252197 24787690 ~ 24795423 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 23206 25076773 ~ 25079035 (-)

Expression


Co-expression Network