LOC117599284


Basic Information

Item Value
gene id LOC117599284
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21521346 ~ 21535366 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312085.1
ctcagctctgtgcttggattGGATCCTGTACcatcCTCCCTGTTGCTCCAGGATGATTTGGAGAACAGCCCTGCACTACGCCCAATTCTGGCTTGTCCTGGCTTTAGCATCCGGGCAGCTCACTAATGAGCAGAAGGTCCGGATCGTGGATTTGCACAACCAGTATCGCTCCTTGGTCAATCCCCAGGCTGCTAATATGCAACGCATGctTTGGGATAATGCGATAAGTCAGGTGGCTGGCAATTACTCCGCTCAGTGCAGATGGGACCACAACCCTAAAGTCTTCGGCATACTTGGAGAAAACCTCTTTATGACACTCGGACCCCTAACCATCGATCTACCAGTCAGTTTATGGTTTAATGAGCGTGACAATTACAACTTTAACACCAACAGCTGTACTGAAGGGAAACTGTGTGGACATTACactcagTTGGTGTGGGCGAACACCACCTTCATCGGCTGTGCTGCACACTTTTGCTCTGATGTTCCTAACTTTAACGTTCAAAACGCCACAATACTGGTCTGCAACTATTACCCTCCAGGTAATATAATGGGACAATCACCATATCAAGAAGGACAGGCATGCTCCGCATGTTCAAAGGGGACGATAGGATGCGTGAACAATACCTGTGATCGAGGTACCAATATAACCACAGGAATTTCACCCTCCGCTATAGCAAGTTTGACTAGCACAGGCAACAGTGGGAGCACAGGAAGTTCAGCAGGATTTACAAAACCCTCGGCAGCTACGCTACTGCTCGCTGGTCTGACGGCTTTTTATATTCGAATGACATGAACATGATCTCAAATGCTGACGTTTGTCTAGTAGTAATAAGTCAAGGTCAAGTCAAGGTTACTGATGGCTGATTTATACatgtaataaatttatacatttaat

Function

GO: NA

KEGG:

id description
K13449 PR1; pathogenesis-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312085.1 True 898 mRNA 0.46 7 21521346 21535366

Neighbor

gene id symbol gene type direction distance location
LOC113530406 LOC108276167,LOC105022368 coding upstream 65498 21452268 ~ 21455848 (+)
vdra vdr,vdra,LOC103045919,LOC108435544,LOC107701250,LOC107702164,LOC107565314 coding upstream 83483 21378129 ~ 21437863 (+)
calcrl2 LOC108276023 coding upstream 169330 21323924 ~ 21352016 (+)
ttc29 ttc29 coding upstream 198123 21315381 ~ 21323223 (+)
LOC117599257 NA coding upstream 208551 21310075 ~ 21312795 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding downstream 76437 21611803 ~ 21626745 (+)
LOC113530651 cdkl5,LOC108276197 coding downstream 138971 21674337 ~ 21748403 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding downstream 219481 21754847 ~ 21795371 (+)
syap1 syap1 coding downstream 264458 21799824 ~ 21806660 (+)
fbxl5 fbxl5,LOC101481374 coding downstream 272948 21808314 ~ 21828623 (+)
G258758 NA non-coding upstream 10352 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 135245 21384291 ~ 21386101 (+)
G258680 NA non-coding upstream 166616 21354440 ~ 21354730 (+)
G258459 ppp1r14c,LOC107697847,LOC107738512,LOC107664259 non-coding upstream 389293 21115050 ~ 21132053 (+)
G258462 NA non-coding upstream 413331 21107347 ~ 21108015 (+)
LOC113530300 NA non-coding downstream 65256 21600622 ~ 21602468 (+)
G258883 NA non-coding downstream 214645 21750011 ~ 21752454 (+)
LOC117599289 NA non-coding downstream 435012 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 470964 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 471342 22006708 ~ 22007039 (+)
si:ch73-290k24.5 LOC108275473 other upstream 282347 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 613887 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1007151 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1122632 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 1816283 19625529 ~ 19705063 (+)
LOC117599233 NA other downstream 2679 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 1136032 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1836378 23371744 ~ 23383653 (+)
G259993 NA other downstream 1852172 23387538 ~ 23389314 (+)
G260415 NA other downstream 2496861 24032227 ~ 24032724 (+)

Expression


Co-expression Network