abcg2a (LOC108275736,LOC108435561)


Basic Information

Item Value
gene id abcg2a
gene name LOC108275736,LOC108435561
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21838989 ~ 21857859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312133.1
GATTCAGTTACCGTTATTATGTTCATCTGGTGCTGCAGCTTCGTGCAATCAcgaaaaaaaggattaaaaatcGGGGGAAACCGGAAAATCAGTAGCTGCCGATAAGATTTTATGAGAGCAGAGTCCACgaagagtaaacacacacatgcacgcatcCTGACCGGGTTGTGTAACCACGAATCTGCCAAATAAGGACCATAAAGTGGAGCCATGCTGATACAGAGCCCACCATAAACTCACgttgtataacagcacatgctTTGCACGAAATCCCGTGTGTATTTAAATATGCGACCGCGCACGCATCCTATAGCAGACCCAAGATACAGGCTTTAGCTTTATTTGCATATGAGAGCAAACCTACGATTGAATCCCTCCTATATCCTGAGCACGTGCCATCCGCGACCTATTTAGACGACATAGTGTGAAGTTGAAGGTCTCGCGCTACCACTCAGTCTCAGACAATACTGCAGTGCGCGTGCGGTTCTCTAACGCGCGCGCTCCGGTGCCCGTTATGGTTTTATAAAGATTTACGGAAGAGCGCGAGGAGCTAGCTGCACGAGCCGTTTACATCTGTCAGGATGccagaaaacagaaacatggatgGTGTGAAGGGAGGAGTGTGTGGGGCTACAGTAAGCTTCCACAACATCCACTACAGCGTCAGCAGCAGGACTGGGATGCTCTGCAAACAGAAGAAGACCTGTAAAAACATCCTCATCGACCTCAATGGAATTATGAAGCCTGGAATGAACGCCATATTAGGAGCCACCGGGAGCGGAAAATCCTCttttttGGATGTGTTGGCAGCGAGGAAAGATCCAAAAGGACTGACTGGAGAGGTGCTGATAGACGGAGCACCACAGCCCCCCAACTTTAAATGTCTGTCTGGATATGTAGTACAGgatgATGTGGTGATGGGAACACTAACAGTGAGGGAGAATCTGCGCTTCTCAGCAGCACTGAGGCTTCCGATGTCTATCAgccagaaggagaaggaggagaaagtGAAGCGACTCATTGACGAGCTCGGGCTGACTAAAGTAGCTGACTCACGGGTGGGCACACAGTTGATTCGTGGCATTTCTGGAGGTGAGAGAAAGAGGACCAACATCGGCATGGAACTTATTATCGATCCATCTGTCCTCTTCCTGGACGAGCCGACGACTGGTCTGGACGCAAGCACGGCTAACTCTGTACTGTCACTGCTGAAGAGGATGTCGAATCATGGTCGGACCATCATCCTGTCCATCCACCAGCCGCGTTACTCCATTTACCGGCTGTTCGACACACTCACCCTGCTGGTGGCAGGCAGACAGGTTTACCACGGGCCTGCTCAGAGCGCACTGGACTACTTCAGCGACATTGGCTTCACCTGTGAACCGCATAACAACCCCGCTGATTTCTTCCTGGATGTCATTAATGGAGATTATACTGCACTGTCTCAAAACATACCAAAGGATAATGCagAGGTGGATCATAAGCAATATGCATCGTCCCGTCAGAACATCGAGGACCGTCTGGTGCAGGAGTACAAGCAGTGGTCTTACTATCAGCAGACCAAAGACGAGCTGGAGGAAATCACACAGGGACGCAAGTACGACAACCGGCCCAAATCACGCACCATCACCTACAACACGTCCTTCTGCCACCAGTTCAAATGGGTGCTGAAGAGGACGTTCCGCAACCTGATGCTCAACCCACAGACCTCCTTCGCTCAGGTCGGCGTGACTCTTTTCTTAGCTCTGATTGTCGGTGCCATCTTTTTCAATGTGCCAGACGATACAAGTGGAATCCAGAACAGGATGGGCGCCTTGTTCTTCATCACCACCAACCAGTGTTTCGGCTCGCTGTCCTCTGCTGAACTCTTCATCACAGAACGCAAGCTCTTCCTACACGAGTATGTTAGCGGTTATTACAGAGTGTCTGTGTACTTCCTCTGTAAGCTGCTCTCGGATATTCTCACACTGCGCACTGTTCCAGCCATCATCTTCAGCTCAGTGGCCTACTGGATGattgGGTTCAAAAGGGCTGTtgggtcattttttttcttcatgttcacCGTCGCCATGACTGCATACACAGCGACATCCATGGTGATGGCCATCTCTGCTGATCAGAACGTGGTGGCCATCGCCAACATCTACATGACCATCACCTTCGTGTTCATGATGATTTTCTCGGGATTGTTGGTGAATTTGCCGAGCATTGCTGACTGGCTGAACTGGTTAAAATACTTCAGCATTCCACGCTATGGCCTTACTGGTCTCCTGGTGAATGAGTTTGTTGGGCTGGAATTCTGTGACCCTCTTCCGACTCTGCAACCTGTCTTCAATATCACTGCAGCCTCCAACTGTTCCATTCGTATGTCTGGAGATGAATATCTGACGAAGCAGGGCATCGATTACTCCACCTGGGGCATGTGGCAGAACAACGTGGCTCTGGGCTGCATGGTCATCATATTCCTGAGCATTGCATACCTGAAACTGCTCTTAATTAAGAAATTtacatagatacacacacacacaaacagacacacgcTAGCTGCTTTTCTGGGCTTTGAGTCCCACTTGAGCTGTTTAAATTACACACATGTTTCCTCCCTTTATAGTATTCAGCACTTATTATACTTCGCTCTGCCTCCTGACTGGCTCCTCCCCCTCATTACTGCCTTCTTTTCCTTAAATCTTTTCTTATTTATCAAAATTTACTTAATCATGCCTCTTCCCAGTCTTCTCAGGTTCTTTACAAGTTCTTGTTTGAACATATTTCATGGCTATACAACTTTTCCTGATATTTCTGCACTTTTCAGTTGGTTTTTTATTCTTGTTCTCTGTTTTTGTCCTGcacatcatatatacatataaacactgCATTTTTGTATATAGTTTTGTTCACACAACCAATTTTTAGAGTTTAATTCCAACTTAGATCTGCCTCTGATAATTAAAGCACTCTAACAAAGCTTCAATCCCATCGAACAAAACTGAACACTATGGAGTATTCGAGCCAGTTGTGTTTGAATGGGAATTAAACTCTGAAGGCTACAAAAGCATtatgtggaaaaagaaaaaaaaaagcctaacaCTTTATATTAATGGACCCTTA

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family G member 2-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0043190 ATP-binding cassette (ABC) transporter complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312133.1 True 3108 mRNA 0.47 16 21838989 21857859

Neighbor

gene id symbol gene type direction distance location
fbxl5 fbxl5,LOC101481374 coding upstream 10366 21808314 ~ 21828623 (+)
syap1 syap1 coding upstream 32329 21799824 ~ 21806660 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding upstream 43618 21754847 ~ 21795371 (+)
LOC113530651 cdkl5,LOC108276197 coding upstream 90586 21674337 ~ 21748403 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding upstream 212244 21611803 ~ 21626745 (+)
LOC113530692 NA coding downstream 97699 21955558 ~ 21958696 (+)
LOC113530693 LOC108275738 coding downstream 102568 21960427 ~ 21962912 (+)
LOC113530690 LOC108275738 coding downstream 105419 21963278 ~ 21966895 (+)
ndnf ndnf,LOC107669702 coding downstream 212576 22070435 ~ 22087209 (+)
prdm5 prdm5,LOC102798237 coding downstream 240894 22098753 ~ 22148588 (+)
G258883 NA non-coding upstream 86535 21750011 ~ 21752454 (+)
LOC113530300 NA non-coding upstream 236521 21600622 ~ 21602468 (+)
G258753 NA non-coding upstream 282551 21479232 ~ 21556438 (+)
G258758 NA non-coding upstream 327995 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 452888 21384291 ~ 21386101 (+)
LOC117599289 NA non-coding downstream 112519 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 148471 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 148849 22006708 ~ 22007039 (+)
G259093 cpeb2,LOC108276376 non-coding downstream 158252 22016111 ~ 22022472 (+)
G259094 NA non-coding downstream 167949 22025808 ~ 22026642 (+)
LOC117599233 NA other upstream 296562 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 599990 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 931530 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1324794 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1440275 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 813539 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1513885 23371744 ~ 23383653 (+)
G259993 NA other downstream 1529679 23387538 ~ 23389314 (+)
G260415 NA other downstream 2174368 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2410718 24268577 ~ 24269267 (+)

Expression


Co-expression Network