LOC113530690 (LOC108275738)


Basic Information

Item Value
gene id LOC113530690
gene name LOC108275738
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21963278 ~ 21966895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312134.1
CAGATGTAGCACTGCATCTGTTCCGTATCCACACAGCAGAGTAGCCTATATACCCGAAAGAGAGAACTGTACTCTTGTGCAGAAGTGTACTATTTCTGCATAAGGATTACATATACGAAAAACATCCAGCATAAATTTAGAAGGGGACATTTCAGCACGCATATCCAGCGAAGAACAAAGAACAAGAAGAATCtgctcatttcattttttgctaGAAGAAGTGGTATATGGAGAAAGTGActccccccccctttttttccccacaacgCTTCGTTTATCTAACTGTACATATTTGTCTGTTGTTCTACCATCAAAATTATAGGAGCTACTTTTTTTCAGTAATCCATTTGAAGAGGAGCAAATGGATTTCGAAGATAACAATACAGAGAGTATTGAGTTTGAATATGCTGATATCAGTACTCTTATGGATCAATTGTGCCACAAAGAGGACGTAGCAAAAGTTGGATCCATTGTTGTCCCATTATTCTTCAGCATCGTGGTCTTGCTCAGTCTCATTGGTAACATCTTGGTTCTTGTGATTCTCGCATACTTTGAGAATATCAAATCATTGACCAACATCTTCATACTGAACTTGGCcgtgtcagacctgctgttcaCTGTCGGACTGCCGTTCTGGGCTTGTTACTACATCTGGGGTTGGACTCTTGGAGATGCAGCTTGCAAAGCTGTCTGCTTCGTCTTCTACGCTGGTTTTTACAGCAGCATCGTGTTCCTGATGCTGATGACCATTCAGCGCTACATGGCCGTGGTGTACCCTCTCTCGGACTGGGAAAAAGGACAGGGTTTTGCACTAATCCCTATCCTCGGCTGGGTGGTGAGCATCGCAGTGGCATTGCCAGCCCCACTCTACAGCTCTGCAATGCCTGATCCAGCAGATGCTTCAGAACTCTACTGTGAGTATAATTCCTTTCAGGCAGACCTTGCGCTTACGTACGAACAgaactctttttttgtttgcgCCTTTTTGATCATGGGTTTTTGCTATGTAAGAATTCTGCAGACCATCTTCAAGACGCGAACGAACAAGAGACACCGTACTATCAGACTCATCTTCTGCATCGTAGTCGTGTTCTATATTGGTTGGGCTCCTTATAACCTGGTgatttttttacaaacattaaCCCATCTTAAGGTCAAGTTTTTCATAGACTGCGATGTCACGCATCATCTTGACTATGCTGAATACGTCAGTAAACTGCTGGCATTTTCTCACTGCTGCCTTAATCCCGTGCTTTATGTTTTCGTTGGTGTGAAATTCAGAAATTATCTAAAGGAGATTCTGCAGAAGATTTTTCAAAGGCCACTCAACACGAGTACACCACAAACACGAACTGCTAACGCTCAGTCCCTGGGCTCCTTGTACTGATACTGCAACAACTGCAGAAGCAGTTATTGAGCTGTCTGATTcagtgtaaatatgtttataaatgatttatgcatttatttgtaCAATACTGAAATAGATGTACATtaaggcatttttttaaaatgatggacAAAGATTGGGGTTCTGTGAATCCCATCAATGtactttttggtttgtttaaaaaaaaaaaaaaagctctatttgagatacatacactcactgtccactttattaggaacacatctATACCTGTACATTCTTttattcatgcaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04193 XCR1; XC chemokine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312134.1 True 1673 mRNA 0.41 4 21963278 21966895

Neighbor

gene id symbol gene type direction distance location
LOC113530693 LOC108275738 coding upstream 366 21960427 ~ 21962912 (+)
LOC113530692 NA coding upstream 4582 21955558 ~ 21958696 (+)
abcg2a LOC108275736,LOC108435561 coding upstream 105419 21838989 ~ 21857859 (+)
fbxl5 fbxl5,LOC101481374 coding upstream 134655 21808314 ~ 21828623 (+)
syap1 syap1 coding upstream 156618 21799824 ~ 21806660 (+)
ndnf ndnf,LOC107669702 coding downstream 103540 22070435 ~ 22087209 (+)
prdm5 prdm5,LOC102798237 coding downstream 131858 22098753 ~ 22148588 (+)
LOC113530350 LOC108275518,LOC108435541 coding downstream 278600 22245495 ~ 22252789 (+)
slc34a2b slc34a2,LOC108435540,LOC107710230,LOC107698513,LOC107549163 coding downstream 302806 22269701 ~ 22276968 (+)
psmb11b LOC108275645,LOC102798532,LOC102212057 coding downstream 340458 22307353 ~ 22308782 (+)
G258883 NA non-coding upstream 210824 21750011 ~ 21752454 (+)
LOC113530300 NA non-coding upstream 360810 21600622 ~ 21602468 (+)
G258753 NA non-coding upstream 406840 21479232 ~ 21556438 (+)
G258758 NA non-coding upstream 452284 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 577177 21384291 ~ 21386101 (+)
LOC117599289 NA non-coding downstream 3483 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 39435 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 39813 22006708 ~ 22007039 (+)
G259093 cpeb2,LOC108276376 non-coding downstream 49216 22016111 ~ 22022472 (+)
G259094 NA non-coding downstream 58913 22025808 ~ 22026642 (+)
LOC117599233 NA other upstream 420851 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 724279 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 1055819 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1449083 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1564564 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 704503 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1404849 23371744 ~ 23383653 (+)
G259993 NA other downstream 1420643 23387538 ~ 23389314 (+)
G260415 NA other downstream 2065332 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2301682 24268577 ~ 24269267 (+)

Expression


Co-expression Network