tktb (tktb,LOC108276051,LOC108410447,LOC103046877)


Basic Information

Item Value
gene id tktb
gene name tktb,LOC108276051,LOC108410447,LOC103046877
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 10786494 ~ 10795610 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312146.1
GAGCCAGTGTCAAGCCTCACTTAAAAGTGCTGGAGCACGCTCCTGTCCTGCTCCTCGTTCCACTTCTGCAAGCGCTATCTGAAACTTGTATATTCGTTATTTCTGTATCTCGTTTCAGGTAAACATCCTCAAAAATGGAGAGTTACCACAAACCCGACGAGAAAACTCTTCAGGGCCTGAAGAACATTGCTAACAAGCTAAGAATTCACTCCATCAGGGCGACATGCGCCTCAAATTCAGGACACCCCACATCATGCTGCAGCGCCGCAGAGGTCATGTCTGTGCTGTTCTTCCACACCATGCGCTACAAAGCTGATGACCCCCGCAACGCCTGCAATGACCGCTTCGTCTTGTCTAAGGGTCATGCTGCTCCCATTCTCTATGCAGCATGGGTAGAGGCTGGCTATGTGAAAGAGGCTGAATTGCTTAACTTGCGCAAGATCGACTGCGTCCTTGAGGGCCATCCTACACCTaaATTAGCCTTTGTGGATGTGGCTACAGGCTCACTGGGTCAGGGTCTGGGAGCTGCATGTGGGATGGCTTACACAGCAAAGTACTTTGACAAATCCAGTTACCGTGTGTACTGCCTGCTGGGAGATGGAGAGTGCTCTGAGGGTTCAGTGTGGGAGGCCATGGCTTTTGCTTCCTACTATGGCCTGGATAACCTGGTAGCTATTCTGGATGTGAACCGTCTTGGGCAGAGTGAGGCTGCACCTCTGGAGCACAACATGTCTGCCTACCAGGAGCGCTGCAAGGCTTTCGGCTGGAACACGTGTGTGGTCGATGGCCATGATGTGGAAGAGCTGTGTAAGGAACTGTGGAACGCAGAACGTTTCAAAGGGAAGCCCACTGCCATTGTGGCCAAAACCTTCAAGGGCAAAGGGCTCAAAGGAATTGAGGACAATGATAATTGGCATGGCAAACCCATCCCTAAGGAGCATGTGGATGAGCTGATTGCTCATCTTGAGAACCAGATCCATGCTTCTGGGAAACCCCTCCAGGCTGCACTGCCTAATGACGATGCAGCTCCTGTAGACCCTAGTCCCATCTACCTACCGTCTCCTCCAGAATACAAGCCTGGAGACAAGATCTCTACCAGGAAAGCTTATGGTGTTGCCCTAAAGAAGATGGGAGATGCCAGCCAGCGTATTGTGGCTCTGGATGGAGATACCAAAAATTCTACCTTCAGTGAGACCTTCAGGAAAGCTCATCCTGATCGCTACATAGAGTGTTTCATTGCTGAGCAGAATatgGCAAGTGTGGCAATTGGGTGTGCCACTCGTGATCGCACTGTTCCATTTGCCAGCACGTTTGCTGCTTTCTTATCGCGTGCCTATGACCAGATCCGCATGGCAGCAATTTCTCAGTCTAATGTCAACCTGGTGGGTTCCCACTGTGGCGTCTCTATTGGTGAGGACGGCCCCTCTCAGATGGCTTTGGAGGATCTTGCAATGTTCCGTGCTATCCCAACTTGCACTGTGTTTTACCCTAGTGATGGCGTGTCCACTGAGAGGGCAGTAGAGTTGGCAGCAAATACAAAGGGTATCTGTTTCATAAGGACCAGCCGACCAGACACAGCAGTCCTATATGAGCCAAATGAGAAATTTGAAATTGGCAAAGCTAAGGTGGTGCGTCAGTCTAACAGTGATCAGGTGACTGTGATTGGAGCTGGAGTCACACTGCATGAGGCACTAGCTGCACATGACATTCTGGCTAAGGAAGGTGTACACATCCGTGTAATTGACCCATTCACTATCAAGCCCCTGGATGCTGCTACAATTGTGGCCAGTGCTCGTGCTACTCAAGGCAAAGTGATCACAGTGGAGGATCATTACAAAGAGGGTGGTCTGGGTGAGGCTGTCTTGGCAGCAGTTGGGGAGGAACCAGGCATCGTGGTACATCGACTGGCTGTGTGCGGAGTGCCCCAGAGTGGCAAACCCCAGGAGCTGCTGGACTTGTTTGGCATCAGTGCTAAGTCTATTGTGGCTGCAGTCAGAAGCACTTTTGCCAACTGAATCCCAACAAATCCCACCCAGTCTTTCCTTCCTCCTGACCTACCGCTAATACAATTGGCTTAAATTCTTTTGGCCTGTAACAAGTTCTCCCCAACTAGAGCACTGCAATTAACGACGTTAGAGGAAAACATCTGAAacggttctttttttttcttgatgctTCTAATGTGGCAGCTTTGCAAAGATTTTGAGTAACATTTCTGGCGTTCAGGTCATGTTACACATTCATCCTGACAGATGAAGAGTGACCTTCTTCATGATCAGTCATGTATTGAACATTTCATTTGCTAAATCATGGTGCAGTGCTTATGACACATCACTTATGTTTAACTTTGCCATTCCAGTTCCTACATTTCTTTCATCTTCTCCTCTGCTAATGAGTCCCCCCAAGTATGAATGTTACcttcagtaaaaaaatatttactgtcCTTAGATGGTAAATTATGGTTGCAGTTGAAATTCCTAACTGATTGACGTAACTGACGATAAGTTCCTCTGACTACTTCAGAGGAACGTAACGAGGCACCTATAATGTTTCATATCTCATGTGTCTAAGCTACTGTGTATTTGCTTCAGTCGCAGCTATTCTTGTGTACCGGTTTGTGCGTCATGTTACTGAACTGCACAGATGGTTGTTGGTTGTGTGAATTATCTGGTTCACTCTGCCTTtcataaacagtaataaaattaaCTGTTCTCCCA

Function

symbol description
tktb Predicted to enable thiamine pyrophosphate binding activity and transketolase activity. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; midbrain; and yolk. Orthologous to several human genes including TKTL2 (transketolase like 2).

NR:

description
PREDICTED: transketolase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004802 transketolase activity molecular_function

KEGG:

id description
K00615 E2.2.1.1, tktA, tktB; transketolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312146.1 True 2717 mRNA 0.48 14 10786494 10795610

Neighbor

gene id symbol gene type direction distance location
lrrc23 lrrc23 coding upstream 1536 10780232 ~ 10784958 (+)
usp19 usp19 coding upstream 16111 10745808 ~ 10770383 (+)
lamb2 lamb2,LOC108275997,LOC108410445,LOC107737594,LOC107699592 coding upstream 42106 10712763 ~ 10744388 (+)
lamb2l lamb2 coding upstream 76351 10665028 ~ 10710143 (+)
si:rp71-17i16.6 NA coding upstream 122875 10659168 ~ 10663619 (+)
si:dkey-32e6.6 LOC108276052 coding downstream 6450 10802060 ~ 10816034 (+)
bgnb bgn,LOC107712721,LOC105006929,LOC107699588,LOC107672034 coding downstream 28561 10824171 ~ 10841193 (+)
ccnq fam58a,LOC107699584,LOC107671950,LOC107737713 coding downstream 62033 10857643 ~ 10865184 (+)
haus7 haus7 coding downstream 122665 10918275 ~ 10927209 (+)
si:dkey-93l1.9 NA coding downstream 134637 10930247 ~ 10931966 (+)
G252732 NA non-coding upstream 20387 10765126 ~ 10766107 (+)
G252720 NA non-coding upstream 130469 10655807 ~ 10656025 (+)
G252665 NA non-coding upstream 153075 10620649 ~ 10633419 (+)
LOC117599292 LOC108275548,LOC103044939,LOC108434838,LOC102220172,LOC108233014,LOC102782874,LOC100703845,LOC107391429,LOC101472191 non-coding upstream 157690 10624852 ~ 10628804 (+)
G252675 NA non-coding upstream 245015 10541270 ~ 10541479 (+)
G252893 NA non-coding downstream 149470 10945080 ~ 10946913 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding downstream 154059 10949669 ~ 10961642 (+)
G252955 NA non-coding downstream 202471 10998081 ~ 10999820 (+)
G252966 NA non-coding downstream 242608 11038218 ~ 11039431 (+)
G252996 NA non-coding downstream 308529 11104139 ~ 11104527 (+)
si:dkey-32e6.3 LOC108276471 other upstream 6634 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 444066 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 2159469 8620982 ~ 8627025 (+)
fam131c fam131c other upstream 2340889 8437864 ~ 8445605 (+)
spen spen,LOC107737540,LOC107716126,LOC107687431,LOC107591084,LOC107593929,LOC107673077 other upstream 2404311 8352779 ~ 8382183 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other downstream 48001 10843611 ~ 10852528 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other downstream 76419 10872029 ~ 10913596 (+)
oard1 oard1 other downstream 435768 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 596824 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 674441 11470051 ~ 11479376 (+)

Expression


Co-expression Network