eif4e3 (eif4e3,LOC107666244,LOC107568047,LOC107705706,LOC107681400,LOC107727004)


Basic Information

Item Value
gene id eif4e3
gene name eif4e3,LOC107666244,LOC107568047,LOC107705706,LOC107681400,LOC107727004
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 14520259 ~ 14528718 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312176.1
CGACTCCGGGCAGAAATCAGCTGCTCGCTTCACTCCAGCGCGGCTGTGGCTCGGGCTTGTTTTGGCGGTGACGCGGCGGAGCAGCCGGCCGAGCGGCAAATGAGTCAGCAGCGCCCAGAGCGTCGCTTTTTTCTGATGTGCCACTAAAACAAGCTCTATTTGCGAAACTTTACGCGTTGGTTACCAGATTATCAGTGAAAATGGCAGTACCTGCAGCCCAGAATCTGCAGCTGAACGCGGGAAGACGAAGCAGCCCTGTGAGCTCTTCGGAAAATAACATTCACATCGACGAGAGAGAATTGGAAAACATCACAAACAACGTCGAAGACGGGACTTCACTCCCATTGCATTCTCCATGGACCTTCTGGCTCGATAGGTCATTACCGGGGACAACAGCAGCAGAGTGTGAGTCAAATCTGAAAAAGATCTACACAGTACACACTGTTCAGAGTTTCTGGAGTGTGTACAACAACATCCCTCCTGTGTCATGCCTCCCACTGAGGTGTAGCTACCACTTAATGCGAGGAGAAAGAAGACCACTATGGGAGGAAGAAAGTAATGCAAAGGGAGGTGTGTGGAAGATGAAGGTACCAAAGGAGAGCACATTAGCTGTGTGGAAAGAGTTACTGCTCGCTACTATTGGTGAACAGTTTACTGACTATTGTGCATCAGagGATGAAGTTGTTGGTGTAAGTGTCAGTGTGCGAGACAGAGAGGATGTGGTTCAGGTTTGGAACGGAAATGCATCTTTCGCTAATGAGGCAAACATTTTAGGAAGAATCTACGAGCTCCTTCCACAGATATCTTTTAAAGCAGTATTTTATAAACCGCACGAGGAGCACCACGCATTTGAAGGTGGTCGTTCAAGACATTAGCAGACTTTGCACATTCAGTGTCTTTCCTTTCACTGTCTCATTCTTCGACTGTCCTTAGAAAatggacttaaaaaaaaaaaaaaaaaaaaagatctcacACCTGATCGGAAGTGTTTAACTGCTTTACCTTGCAGGAACTGAAATACTTTATGTTACAGATCAGTTCTAATTTTAGGTATTTTAAGCTTAGGCTA

Function

symbol description
eif4e3 Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within regulation of translation and translational initiation. Predicted to be part of eukaryotic translation initiation factor 4F complex and mRNA cap binding activity complex. Orthologous to human EIF4E3 (eukaryotic translation initiation factor 4E family member 3).

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E type 3

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0005845 mRNA cap binding complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312176.1 True 1069 mRNA 0.46 7 14520259 14528718

Neighbor

gene id symbol gene type direction distance location
rybpa LOC108276139 coding upstream 11829 14491176 ~ 14508430 (+)
cntn3a.2 cntn3a.2,LOC108275552,LOC108438229,LOC107727029,LOC107681399,LOC107705655 coding upstream 79922 14364413 ~ 14440337 (+)
si:dkey-178k16.1 LOC108276489,LOC108438207 coding upstream 256078 14204846 ~ 14264181 (+)
fam217b LOC108276482 coding upstream 358654 14157174 ~ 14161605 (+)
phactr3a LOC108276101,LOC108438212,LOC107696979,LOC107705714 coding upstream 399555 14087075 ~ 14120704 (+)
foxp1a foxp1,foxp1a,LOC108275860,LOC107551537 coding downstream 2117 14530835 ~ 14574310 (+)
krt8 krt8,LOC100304655,LOC108411779,LOC107705700,LOC107666368,LOC102212080,LOC100702817 coding downstream 170536 14699254 ~ 14704080 (+)
LOC113530635 krt4,LOC108276093,LOC108429286,LOC108429265,LOC102790234 coding downstream 202876 14731594 ~ 14735982 (+)
plxnb1a plxnb1a,LOC108275501 coding downstream 225835 14754553 ~ 14822158 (+)
si:ch211-220i18.4 LOC108275527 coding downstream 296864 14825582 ~ 14834227 (+)
G254967 LOC108276138 non-coding upstream 42550 14443189 ~ 14477709 (+)
G254653 NA non-coding upstream 451796 14068259 ~ 14068463 (+)
G254644 NA non-coding upstream 464297 14055216 ~ 14055962 (+)
G254633 NA non-coding upstream 487926 14032116 ~ 14032333 (+)
G254472 sulf2 non-coding upstream 687568 13827684 ~ 13832691 (+)
G254966 NA non-coding downstream 78361 14607079 ~ 14615274 (+)
G255057 NA non-coding downstream 176550 14705268 ~ 14705536 (+)
G255058 NA non-coding downstream 176979 14705697 ~ 14706521 (+)
G255189 NA non-coding downstream 350194 14878912 ~ 14879327 (+)
G255209 NA non-coding downstream 468107 14996825 ~ 15002630 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 448043 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 1550250 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 1665879 12837051 ~ 12854380 (+)
LOC113530266 dnmt3b,dnmt3bb.2,LOC107559473,LOC107747973,LOC105013881,LOC107603154 other upstream 2134263 12366613 ~ 12385996 (+)
ppdpfb pdpfb,ppdpf,LOC107747982,LOC107563664,LOC107657053,LOC107560892 other upstream 2376732 12141472 ~ 12143527 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other downstream 93599 14622317 ~ 14673952 (+)
rps21 rps21,LOC107666483 other downstream 588352 15117070 ~ 15167668 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 1681372 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 1703295 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 1834828 16363546 ~ 16396245 (+)

Expression


Co-expression Network