asb14b (asb14b,LOC108276494,LOC108436293,LOC107671999,LOC107560887,LOC107737718)


Basic Information

Item Value
gene id asb14b
gene name asb14b,LOC108276494,LOC108436293,LOC107671999,LOC107560887,LOC107737718
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 11079277 ~ 11088628 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312190.1
ACATACCTTTTGACCTTTCAATGTGCAGTTTAGTGAATTTTATATAGGGGTTATCTTCTTGTAATAACACTCTATTAAATGATTTCCTGAATGCAATAATCAAGTCTTTCTTCTGGACTGAATTTTCTgtgcttaaaatatatttaaatccaCTGTGATCATTTGCATTCTTTGCTAAactatatattaaacatttagtgATAACTTACAGTTGCTTTGGGTACCACATTGAGCAACACTGCTTGTGTACTTTTGTTTGGAATACTTTACACATTTCCAAATGCATACTATGGCCTTCCTGTTGCCAGCCTTGATATCTTATAGCCCCAGTATGTCAGCTGGATGGCCAAGCTGaggttcagtgtgttcagtgtcagAGAGGGGTTGGCTGGTCTAGTCCCATGATTGcatatttttaactgtgttaGGATATAAATAGCTGTGTGTCTGCTACAAGCCTGAAACGCTCTGAGGTTataagtgcaaaacaaaacagcagtgtCCATTGCCGAAAGTGTGTAAGATGGAAGGACTGTATGATGAGGAAGAGTGGGATGAAGATGAAGCAACACAATACATGATTGAGCAGAGTCTGTCAGAATATGGCAAGTACAGAGATCAAACTCCTAGTGATCCCACTCTAGAATACATTGACCATGAAGAGATTTTTACAGCCATATGTGCAGCACTGCTGGACCATACATCCTCCTCTGTACATTCCGTATGTATGGTCACAGGAAATGAGGATGCCTTGAAGATTCTTGTGCAGAACAAGGCAGCCATGTCCATGGCAGACAACAGGGGATGGATCCCTCTGCATCAAGCAGCAGTACAGCAGAAAAGGAGCATTTTAGAGATCACTTTTTCAGCATCTCCTCAGGGGTCGGGTGAGTCCCGCACACTGAAAGGAGAGACTCCTCTCTTTCTTGCCGTTGTGAATGGTCTCAGAGTGAATGCTACGTTCCTGCTCCAGAATGGCTGCAACCCTGACTGTCAGAATGAGGATGAGGACACTGCATTAGTTGGGGCCATAAAGAATAATCAATACGACTTGGCCTCTCTTCTTCTACGTTATAATGGTACAGTGGACCAAAAATGCAGCCTCCAGAGAACTGCTCTGCATGAAGCATCTCTGTTGGGCCTAGAGGACTGTGTGTACCAGCTTCTCCAGGCTGGTGCCAACCCAGATGCCTGTGATGCCAATGAACATACACCTTTAGGACTTGCAGCCCAAGCTGGGCATTTGAATGTTGTGGAAATCCTACTACAGAAAGGGGCCAGCATATGGCCACAGCGTCACTCTGTAGAGTCTGTATCAGTGCTGTTTGAGGCGGCAGCATCTGGAAACCCTGATATAATCTCACTGCTGTTGGAGTATGGAGCTGACCCcaacactcccacacacacaggccatcTGCCCATTCACCGTGCTGCTTATCGAGGCCATCTGCTGGCACTGGAACAGCTGATCCCAGTGACTAAAAAAGAGGCCATTAAGGACAGTGGCATGAGCCCATTACATTCAGCTGCTGCAGGTGGACACTCTCAATGTCTTGAGCTGCTCTTGAATGCTGGATTTGACCCGAACTTCATGCTCCATCCACGGGTTCGCAGGAACTACGATGATGAGCGCAGATCAGCACTTTATTTTGCTGTGTCAAACAGCGATGTGCAGTCAGCGAGGTTACTGCTGAAAGCTGGTGCTATGCCAAACCAGGACCCTGTCAACTGTCTGCAAGTAGCCATGCGCCTGGGCAACTATGAACTGATCAACACGCTGCTGCGCTATGGAGCGAATGTGAACTACTACTCACGCGTAAATACTACACACTTCCCCTCGGCCCTACAATACGCAATAAAGGACGAGGTGATGCTCCGGATGCTGCTGAACCATGGCTATGATGTACAGCGCTGCTTTGACTGTCCCTATGGCCAGGGATCTCATGTCCCTGTGGACTATGAGGGCTGGAGCGTTTCTGTGATAAGAGATGTAGTGTTTTGTGAAGTGATAACAGTGTCCTGGCTCAAGCACTTTACAGGCCAGGTGGTAAGAATCTTGCTGGATTATGTCGACCATGTCACCTTCTGTTCCAAACTGAAGAGCATCCTGGCAGAACAGAAACAGTGGCCAGAAATATGCAGGATTCAAGaaaacacTCGAAGCCTGAAGCATTTATGTCGTCTTAAGATCCGTGAGTGCCTTGGTCGTCTGCGCCTTAGGGCTCCAGTTTTTATCAGCTTTTTACCTCTGCCAAACACTCTGAAGGACTATATCCGGTTCACAGAGTATGATATTTACAGCAAAGGAACTATGACGGACCTTGAATAAGacatttcgttttttttttttttcattgccatGCCACTTATTGCCACATGCCTTGATTGTTTattgtcaatcattttatagaaaGCATTGAAATCTTATTCAGCTCCACCCATTTAACCACTAGACACCTTTTTCCCcacaaatcttacctaatgtacctttaaacttcattattactaataaaatatttatagatcaagccacatttaaatgaaacatgtacatgctattttcatttttttactatCTTGACACACAGCACTATCATAGGAATTCAACAACAGAAACAGACAAATTCCCTGTCTATCTGCGTCCACTAAGCAAACGTGTTCTGTCTCAAATTGGATATTTGTGTACTCCAAACCGTTATTGTATACTAACACAAACCTGTATTGCTATTACACTTAatgttttcctattacagttcgAAATTAAAAAACCTTTCATGTAGCGTTCAAA
>XM_034312191.1
ACATACCTTTTGACCTTTCAATGTGCAGTTTAGTGAATTTTATATAGGGGTTATCTTCTTGTAATAACACTCTATTAAATGATTTCCTGAATGCAATAATCAAGTCTTTCTTCTGGACTGAATTTTCTgtgcttaaaatatatttaaatccaCTGTGATCATTTGCATTCTTTGCTAAactatatattaaacatttagtgATAACTTACAGTTGCTTTGGGTACCACATTGAGCAACACTGCTTGTGTACTTTTGTTTGGAATACTTTACACATTTCCAAATGCATACTATGGCCTTCCTGTTGCCAGCCTTGATATCTTATAGCCCCAGTATGTCAGCTGGATGGCCAAGCTGaggttcagtgtgttcagtgtcagAGAGGGGTTGGCTGGTCTAGTCCCATGATTGcatatttttaactgtgttaGGATATAAATAGCTGTGTGTCTGCTACAAGCCTGAAACGCTCTGAGGTTataagtgcaaaacaaaacagcagtgtCCATTGCCGAAAGTGTGTAAGATGGAAGGACTGTATGATGAGGAAGAGTGGGATGAAGATGAAGCAACACAATACATGATTGAGCAGAGTCTGTCAGAATATGGCAAGTACAGAGATCAAACTCCTAGTGATCCCACTCTAGAATACATTGACCATGAAGAGATTTTTACAGCCATATGTGCAGGAAATGAGGATGCCTTGAAGATTCTTGTGCAGAACAAGGCAGCCATGTCCATGGCAGACAACAGGGGATGGATCCCTCTGCATCAAGCAGCAGTACAGCAGAAAAGGAGCATTTTAGAGATCACTTTTTCAGCATCTCCTCAGGGGTCGGGTGAGTCCCGCACACTGAAAGGAGAGACTCCTCTCTTTCTTGCCGTTGTGAATGGTCTCAGAGTGAATGCTACGTTCCTGCTCCAGAATGGCTGCAACCCTGACTGTCAGAATGAGGATGAGGACACTGCATTAGTTGGGGCCATAAAGAATAATCAATACGACTTGGCCTCTCTTCTTCTACGTTATAATGGTACAGTGGACCAAAAATGCAGCCTCCAGAGAACTGCTCTGCATGAAGCATCTCTGTTGGGCCTAGAGGACTGTGTGTACCAGCTTCTCCAGGCTGGTGCCAACCCAGATGCCTGTGATGCCAATGAACATACACCTTTAGGACTTGCAGCCCAAGCTGGGCATTTGAATGTTGTGGAAATCCTACTACAGAAAGGGGCCAGCATATGGCCACAGCGTCACTCTGTAGAGTCTGTATCAGTGCTGTTTGAGGCGGCAGCATCTGGAAACCCTGATATAATCTCACTGCTGTTGGAGTATGGAGCTGACCCcaacactcccacacacacaggccatcTGCCCATTCACCGTGCTGCTTATCGAGGCCATCTGCTGGCACTGGAACAGCTGATCCCAGTGACTAAAAAAGAGGCCATTAAGGACAGTGGCATGAGCCCATTACATTCAGCTGCTGCAGGTGGACACTCTCAATGTCTTGAGCTGCTCTTGAATGCTGGATTTGACCCGAACTTCATGCTCCATCCACGGGTTCGCAGGAACTACGATGATGAGCGCAGATCAGCACTTTATTTTGCTGTGTCAAACAGCGATGTGCAGTCAGCGAGGTTACTGCTGAAAGCTGGTGCTATGCCAAACCAGGACCCTGTCAACTGTCTGCAAGTAGCCATGCGCCTGGGCAACTATGAACTGATCAACACGCTGCTGCGCTATGGAGCGAATGTGAACTACTACTCACGCGTAAATACTACACACTTCCCCTCGGCCCTACAATACGCAATAAAGGACGAGGTGATGCTCCGGATGCTGCTGAACCATGGCTATGATGTACAGCGCTGCTTTGACTGTCCCTATGGCCAGGGATCTCATGTCCCTGTGGACTATGAGGGCTGGAGCGTTTCTGTGATAAGAGATGTAGTGTTTTGTGAAGTGATAACAGTGTCCTGGCTCAAGCACTTTACAGGCCAGGTGGTAAGAATCTTGCTGGATTATGTCGACCATGTCACCTTCTGTTCCAAACTGAAGAGCATCCTGGCAGAACAGAAACAGTGGCCAGAAATATGCAGGATTCAAGaaaacacTCGAAGCCTGAAGCATTTATGTCGTCTTAAGATCCGTGAGTGCCTTGGTCGTCTGCGCCTTAGGGCTCCAGTTTTTATCAGCTTTTTACCTCTGCCAAACACTCTGAAGGACTATATCCGGTTCACAGAGTATGATATTTACAGCAAAGGAACTATGACGGACCTTGAATAAGacatttcgttttttttttttttcattgccatGCCACTTATTGCCACATGCCTTGATTGTTTattgtcaatcattttatagaaaGCATTGAAATCTTATTCAGCTCCACCCATTTAACCACTAGACACCTTTTTCCCcacaaatcttacctaatgtacctttaaacttcattattactaataaaatatttatagatcaagccacatttaaatgaaacatgtacatgctattttcatttttttactatCTTGACACACAGCACTATCATAGGAATTCAACAACAGAAACAGACAAATTCCCTGTCTATCTGCGTCCACTAAGCAAACGTGTTCTGTCTCAAATTGGATATTTGTGTACTCCAAACCGTTATTGTATACTAACACAAACCTGTATTGCTATTACACTTAatgttttcctattacagttcgAAATTAAAAAACCTTTCATGTAGCGTTCAAA

Function

symbol description
asb14b Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB14 (ankyrin repeat and SOCS box containing 14).

NR:

description
dynein heavy chain 12, axonemal-like isoform X1

GO: NA

KEGG:

id description
K10336 ASB14; ankyrin repeat and SOCS box protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312190.1 True 2788 mRNA 0.44 10 11079277 11088628
XM_034312191.1 False 2737 mRNA 0.44 10 11079277 11088628

Neighbor

gene id symbol gene type direction distance location
dnah12 dnah12 coding upstream 3 11051523 ~ 11079274 (+)
ognb LOC108276132 coding upstream 64622 11009781 ~ 11014655 (+)
LOC113530834 NA coding upstream 72636 11004836 ~ 11006641 (+)
rpl10 rl10,rpl10 coding upstream 81844 10994877 ~ 10997433 (+)
LOC113530991 NA coding upstream 82534 10996609 ~ 10996743 (+)
tasorb fam208a coding downstream 1559 11090187 ~ 11103588 (+)
LOC113530897 klhdc8b,LOC107712738,LOC106572099,LOC106566462 coding downstream 35316 11123944 ~ 11223630 (+)
guca1b guca1b,LOC107657012,LOC107562461,LOC107560929 coding downstream 136981 11225609 ~ 11228356 (+)
trnah-gug_14 NA coding downstream 171219 11259847 ~ 11259918 (+)
ebp ebp,LOC107672060,LOC107712744,LOC107657016 coding downstream 172146 11260774 ~ 11264393 (+)
G252966 NA non-coding upstream 39846 11038218 ~ 11039431 (+)
G252955 NA non-coding upstream 79457 10998081 ~ 10999820 (+)
G252903 LOC108249180,LOC108436314,LOC101154674 non-coding upstream 117635 10949669 ~ 10961642 (+)
G252893 NA non-coding upstream 132364 10945080 ~ 10946913 (+)
G252732 NA non-coding upstream 313170 10765126 ~ 10766107 (+)
G252996 NA non-coding downstream 15511 11104139 ~ 11104527 (+)
G253152 NA non-coding downstream 156133 11244761 ~ 11245472 (+)
G253151 NA non-coding downstream 157270 11245898 ~ 11246862 (+)
G253210 NA non-coding downstream 282075 11370703 ~ 11372352 (+)
G253212 NA non-coding downstream 284367 11372995 ~ 11376620 (+)
atp2b3b atp2b3,atp2b3b,LOC107593407,LOC107737604,LOC107672007,LOC107712727 other upstream 165681 10872029 ~ 10913596 (+)
b4galt3 b4galt3,LOC108276285,LOC103022975,LOC108436306,LOC107737602,LOC107593408,LOC107672040,LOC107699583,LOC107087046,LOC101075953 other upstream 226749 10843611 ~ 10852528 (+)
si:dkey-32e6.3 LOC108276471 other upstream 299417 10772671 ~ 10779860 (+)
kcnab2b kcnab2a,kcnab2,kcnab2b,LOC107687393,LOC105894315,LOC108431628,LOC107712982,LOC107592856,LOC107582417,LOC106513833,LOC108276490,LOC108434650,LOC107737578,LOC107672035 other upstream 736849 10270803 ~ 10342428 (+)
LOC113530359 rnf223 other upstream 2452252 8620982 ~ 8627025 (+)
oard1 oard1 other downstream 142750 11231378 ~ 11237367 (+)
wu:fa11c10 fam110a,LOC108276421,LOC106566438,LOC107562466,LOC104960682 other downstream 303806 11392434 ~ 11415449 (+)
zgc:103759 LOC108276081,LOC108436299 other downstream 381423 11470051 ~ 11479376 (+)
arhgap4b arhgap4b,LOC108276080,LOC108436338,LOC107560914,LOC107672018,LOC107737637,LOC107741320 other downstream 394791 11483419 ~ 11507750 (+)
hsd17b10 hsd17b10,LOC107562460,LOC107560905,LOC107741341,LOC107737644 other downstream 505876 11594504 ~ 11640907 (+)

Expression


Co-expression Network