tfr2 (tfr2,LOC108412633,LOC107673155,LOC107676171)


Basic Information

Item Value
gene id tfr2
gene name tfr2,LOC108412633,LOC107673155,LOC107676171
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25015212 ~ 25026090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312192.1
tatattgacattaacataataaataatctaaaacCCCTCCTCTTGACTAATCCTGTACCATGGCCATGTgaaagggggcggggtttaaatgcagtcagttaagagacacacacacacacacacacacacacacacacacacacacactgttagagaACGAGTCTAATGTCCACAAAGGGATTTCAGGaagttttaaagtttaaaggtAAAAGTtggacacacacattaatagAGAGgtcGTAGAGGAGGTTGATGGCTGATCCTGTGCGAAGGCTGCTAGCCGTGTCCTCAAGAGGCAGGGCCAGGGTGGAAGAAGTGGGCGGGGTCAGGGGCTCTGTATCTCAAGTGGAGCTGAAGCTTGTCCAATCAGGATCAGAGGTAGGCTCAGAGGAGGGCCTTAATAATGATGTCACAGGCTTGATGCTACGACAGCGGCTCAGTCGGAGGAAAGCTGTAGTATATCTGACATTGACAGGActgctgatattcactacagCATTCCTGCTGGGGTACGTGTCGTCTCATGGAATGTGCCCTCTCTGTGTGGACGAGGGGGAGCTGGTGCTCGTCGATGACACGGCCGGACCGGACCATTCTCCAAAGACGGGGGGGATGTACCTGGGGGAACTGAGAGACATGCTGAAGAAATACCTGCAGGAGGAGAAGATCGAGGACACAGTCCAGCGAGTGAGCAGGACGGCCCACCCTGCGGGGTCCTCAGAGGGTCATGCTTTAGCCATGGAGATTCTGCAGAGCTTCCAGAACCTTCACATGGACCACACGTGGACCGACTCCCACTACGCCACGCTGCAGTTCccctccaggACGCAGAGGAACGCACTGTGGTTGGTTGATGCTGAGGGGGCGGCGCTTGAAGAGATGCTATTAGACCATGCTGATTACTGCGCATACAGTGCCACAGGAACAGCCACGgggggcgtggtttatgtaaattacgCCCGTCAGGAGGACTTTGATCAGCTGAAGGAGATGGGCGTGGCTCTGAACGGCTCCATTGCCGTAGCGAGGGTCGGAGGGGGCGTGAGCTTCGCTGAGAAGGTGTGGCATGCGCAGGAGGCGGGGCATGTGGGCATCCTCATTTACCCAGACCCCGCCGACATTCCACAGGATCCACGGCGACTTGGGCTCCATAGCAACGCCGCTATCTCCGAACATgtgcacCTAGGATCAGGTGATCCCTTCACTCCTGGTTTCCCCTCCTttaatcacacccagttcccgCCCACCCAGTCCTCCGGGCTGCCAATCATCTtggctcagccaatcagtgCCAATGTGGCTTCCAAACTGCTCAGTCAGCTGTCGGGCGTGGCGTGTCCGCGGGGGTGGAGTGGGCGTCTCCCGTACGTCCGCTGTGTTCTGGGTCCTGAGTTTTCAGCAGCAGATGGACGGAAGGTAAAGATGGCCGTCTATAACACCATGAACTCCGTCCTGCTGAACAACATTTTTGCCTCCATCGAGGGCAAAATTGAgcctgATCAGTATATAATAATGGGGGCTCAGAGGGACTCGTGGGGTCCAGGAGCCGTCAAGTCCGGTGTAGGAACAGCGATTCTGCTGGAACTCGCACGCACTTTCAGTACCATGGTGCAGAAcgggtTTTCTCCCAGACGCAGTTTGCTTTTCGTCAGCTGGGATGCCGGAGAGTTTGGAAACGTGGGCGCCACCGAGTGGCTGGAGGGTTACCTGTCCATGCTACACCTGAAGGCTGTGGCCTACTTCAGTCTGGACCAGGCAGTCATgggtgatgaTACTTTCTCTGTGTACATGAGTCCCTTGCTTGCTGACCTCATCGAAGGAGCCATTAAACAAgttgaaCACCCGAAGCACGTGGGTCAGTCCATCATGTCTGTGGCTGAAGCTCAGGGCGGTTGGAGGAGCAGagtgaaGCCGTTGTATCTGAACAGCGGTGCGTACAGTTTCACAGCGTTCGGTGGTGTTCCTGCCATGGAGCTGCGCTTTCAtgaggagggCCATGTGTACCCGTTTGTGAACACACAGATGGACAGTGTGTTGCGTCTGCAGGAGCGGCTGCAGGGccgtgtgtgtgtagtgggcCGGGCCGTGGCCGAGCTGGTGGGACTGATGGTGCTGAGACTCGCTCATGATCACATCATTGCTCTGGACATCACACCCTACAGCACGACCGCCCTCAAACTCAGCGCCCTGCTCACACAGCTGTCTGCAGagctacaggcccGGGGTCTGTCCCCTCAGTGGGTGTACAGTGCGAGAGGAGATTACAGTCGAGCGGCTAAAACACTGCAGGAGGCCATTAAGAACACAGACATACAGGACGAGAGGATGACACGCCTCTATAACACACGCCTCATgagggtggagtACTACTTCCTGTCTCAGTACGTGTCAGTGGTGGAGACTCCATTCCGCCACGTGCTGCATGGTCGTGGTGAACACACTCTGAGTGCGCTCACTGAGCATCTCTCCCGGCTGCGTTCTCATCCTCACCTGTTCCACGAGGCTCGCTTCCGCCGCCAGCTCGCGCTGTTCACCTGGACACTGCAGGGAGCGGCCAACGCGCTGAGCGGTGACGTCTGGAACATCGACAACCCGTTCTAGAACCTTAACTACCCTGCCCAACCATTCAGAACTCAAAACTGTTCCAAGCCTTTTCTAGAACCTGCAAAATCCCTTCTAAAAAAATTCCTTCACAAAAACCTTCAGGAGCCGTTTGGACCCTTTAGAGCCCTGCTGTAACCTCTGTAGAACATTTACATTCCACTCTAAAAGCTTCACAATCTCTCAACACCATCCACAAACCATTCTAGAACATTCTGCATAACTCCTTCTGGAAGTTGCACAATCAGAACCTTTCTTTCTAGAACCTTCAGTGCTcccaaaacatttataaacatttacatttataaatgctcCATTTATTTTAGGGCATTCAGATACCATTCTAGAACCTTCACTACCCATTCTAGAACCTTCACTACCCATTCTAGAACCTTCACATCCTGTCAGAACCATTGACATCCCATTCTAGAACATTTACTACGTCCCATGAATATTCACAACCCCGTGAGGTCATTTACAACACATTCTAGAACCTGGACAACTCGACAACTCCTTCTAGACTATTCTCAGACTGTTCTAGAACCATCACGACCCTGTTCTAGAATCCGCACAGTTTCTTCTACAAAGTGTCACAGCATGTTGTGAAAAATTCACATGGCATTGTTGCACATCTGGCACTTTCAAAACCGGTTCTACAAATGTCAGAACCACTCAGACAGCCAGTTCTAGAAACTCGAGAACCTTTTCCAGACTATTTCACAAATTCACAACTCACTCTAGAACACATGGAACCCTCACAACCCATTTCTGGGATTCCCAAAGCTAGAGTTTACTCTAATACCATCACAACCTGGAGTTAGCCCATAACCATCACAACATATTCTACAAAaacttgcgtgtgtgtgtgtatgtgtgtgtgtgtatgcgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtctggcagTTTCTCTCGTTAATTACTGATTAATAGACAGTTATGATTACGTtgtaattcttttttattactGAGTGATAATGTTGTTAATAGAAGTAGTAATTATCGAGAGCAGTGTCTCTCATAATTATGACAGTCATACTGTCGTCCAATCAAAAAGCAGCATCTGCTATCAATCATCCCCGTGATGTCAGAGCCACACCCCTGGCCTGTGACATCACCGGGCTCTGTCTTTGCCAGTGATAATGGAGATCAAAGTCCGCCGGTGTGACATCACTTCCTCTGTAGCTCTGATGTCAGAAGCATTGTGTAGCTCTGTGTAGCTCCCTCAGAGAAGGCATGTGCTGTATCTGATGATGTTCATGCTCTGTGTTTGtgatattattgattattgattattgattattgatcatGAGGATGATGACACAGAGGGCTGGTGAGACGAACTCcaataaattattttactttcagCAACAA

Function

symbol description
tfr2 Predicted to enable transferrin receptor activity. Acts upstream of or within iron ion homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in liver. Used to study hemochromatosis type 3. Human ortholog(s) of this gene implicated in hemochromatosis and hemochromatosis type 3. Orthologous to human TFR2 (transferrin receptor 2).

NR:

description
PREDICTED: transferrin receptor protein 2

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K23910 TFR2; transferrin receptor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312192.1 True 4029 mRNA 0.51 19 25015212 25026090

Neighbor

gene id symbol gene type direction distance location
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 32914 24977894 ~ 24982298 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 55194 24932584 ~ 24960018 (-)
LOC117599306 LOC108275826 coding downstream 85826 24921918 ~ 24929386 (-)
LOC113525311 LOC108414782,LOC103038743 coding downstream 116537 24888734 ~ 24898675 (-)
tec tec coding downstream 163345 24836832 ~ 24851867 (-)
ctc1 NA coding upstream 2705 25028795 ~ 25041468 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding upstream 21530 25047620 ~ 25053567 (-)
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding upstream 30828 25056918 ~ 25067948 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 79618 25105708 ~ 25111538 (-)
G260962 NA non-coding downstream 39905 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 141465 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 150322 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 284669 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 286843 24725850 ~ 24728369 (-)
G260926 NA non-coding upstream 17358 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 46621 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 62549 25088639 ~ 25089918 (-)
si:ch211-149b19.4 LOC108275830 other downstream 7019 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 38145 24961021 ~ 24977067 (-)
G260947 NA other downstream 132067 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 219789 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 506744 24501129 ~ 24508468 (-)
G260972 ctc1 other upstream 14701 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 50683 25076773 ~ 25079035 (-)

Expression


Co-expression Network