LOC113530267 (LOC108275728)


Basic Information

Item Value
gene id LOC113530267
gene name LOC108275728
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24680620 ~ 24689895 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312211.1
ttttctctctcctttacACAGAGTACAGAGTGAATTATATATATGaacattaataatttatcatttctCAGTCTCACTCTAGGGTTCAGGACAGAGTGTGATGAAGAAGGTCTCAcccagcagagtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgtgtgtgagtgtgtgagaccCTCTGACAGCAGGTCTGTATGAGTGGATTGTAATTATGAGAACAGGATGCAGTGAAGACACACTTCCCCTTTCCCACAAACACCCTATAGCCTAATTAaagactcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgccaGAAGCACACCTGATCGTCAGTGGGAGGAGTGTgttcacgctctctctctctctctctctctctctcacacacacacacacacacacacgccgtgTTTATCTCTCACCGGTCTCACAGCGTTTCACCGAGCAGCAGACGCGCGTCTCGCGCACTGAACGGGAACTCTCCTCCCGGTTTATCAGCGCGCGCGGGGATTCCTGGTCAATAACCGAGCGCCCTGTgggaagtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgatggagtgtgtccCGTAGAGAGGAATCACAGCAGCACCGCGGGCATGGAGCAGAGAATACCGGGattattactgctgctgctgctgctgagcgGCGCGTGCGTCCCGGAACAAGTCTTAACGGAACACAGGCGTTCTGTGCTGGAGATGTCGACCAATGGGATTTGTCGTTATGGGAACAGAGTGGATTGCTGCTGGGGCTGGACACGAGAGAGCTGGGGACAGTGCAGACCGGTGTGTGAGTTGGGCTGTAAACACGGCGAGTGTGTTGGTCCAGATCAGTGCCGCTGTCACCAGGGATACACGGGCAAGACCTGCAACCaagatgtgaaCGAGTGTGGGCTGAAGCCGCGGCCGTGTAAACACCGCTGTATGAACATGGTGGGCAGTTATAAGTGTTTCTGTCTCACCGGCTACATGATGACCCACGACGGCACCTGCAGGAACAGCCGGACGTGTGCGATGGCTAACTGTCAGTACGGCTGTGCGGTGATGAAGGGGGAGGTCATGTGTCAGTGCCCATCGCCGGGGTTACGGCTCGGCCCAGACCGCAGGACGTGTGTTGacATTGATGAGTGTGCGACGGGCGTGGCCAAGTGTCCGAGGTTCCGGCAGTGTGTGAACACATTCGGCAGCTACATCTGCAAATGTCACAAAGGCTTTGAGCTGCGTTACGTAAATGGCAAATACCAGTGTACAgataaGAACAACCCCTGCCATGAAAAGCCAGACTCCAAAAAGTGCAGATGTAAACTCGGGACCAAGGGGTGGAGCTATGACTGCAAatTTGTTATTACAGTGACTGTTGATCCAGCCAGACCGATTACAACACCCAGACCTACAGCTAAAATCACCGTAGCAACTAGCCCACCAACCACAGCCAAGAAACCAGCCATGACAACCATTACTAtgacaacaaccacaacaaccacttcaccaacaacaaccaccaccaccacagcaacaacaacCACTTCACCAACAACCACCACAACGACAACAACCACTTCACCAACaaccaccacaacaacaacaaccacttcaccaacaaccaccaccacaatGACAACAACTCCAAACACTGTCTCTACAACAACAGCACCAACCACTGTTGCTATGACAACAGCACCAAACACTTTTGCTAGTACAACACCAACCATGACTGCTACAACCACAGTAGCAACCACTGCTGCTATGACAACAATGCCAACCACTGTCACTATGACAACGATGTCAACGACAACAATGGCAAAGACTGTGGCTACGACAACAATGCCAACAACCACCACCATGGCAACAACCACAGCACTGCCAACAACCGTGCAGCTAATCACCACCACGCTGGATAACCGCATACAGGAGATCACACAGAGGCCGAGGGGAGACGTACAcaTTCCGAGGAATCCGGAGCAGAACGTGTTCGAGCTGGACTTTGATGATATCGAGTTGGGGAACACGGCAGATTTTGCACGTGATGATCCAGctgctgGCTCTTTGAGCTGCTCTTTTGATCAGGGTGTGTGCAGCTGGATGACGGATCGGGATGGAGATCTGCGCTGGGAGACGGTAGATGATCCACACGGTGGGCGGTACCTGACTGTACCAGAGCCAAAGACAGGACGAAGTTTAAGAGGGGCGCGGCTCACCATCCCTTTAGCCCCACCCACTATTCCTCCTTGGAAAGGGAGTGATCTTTGCCTGGCATTTAGGCACCGCCTCCAAGGGCTTCTCATTGGCTCCTTGCAGGTGTTTGTGAAAAAGGGGTGGGGCTACAGTCCTGCAGTCTGGACAAGGACAAGTGGACAAGGGTGGAGACACACCCAAATCACACTGTGGGGGCGGAGCATtgaaagtGTGGTGTTTaagggagagaggaggaaggggCGGAGCGGAGAGATCGCCATTGACGACGTGAGCATACACAGAGGAGTGTGCAGTAACAGAGGCcgggactgacacacacacacacacacacacacacacacacacacaccagaactATGAATTATTACAGAGGTGACCTCAGGTTTGGACTTTAACACTCGACTGCTCCACGCCGTCACCATGGATCCCACGCACCACAGTGGACTTCTGTCCTGGGGATATTATGGGATGGAAACGTTCACAGTAAAGTGGCTTTTTCACCTCATGCAGAAAACagactgcttttaaaaaaatatatactttatgtGTACTGGGAATCAGTGACGAGACCAGAGCGAGGGATGAAAGACGTCCACACGCAGGACCACGTAAATATTTCTGcaccacactctctctctggccAATAGGAGAGCAGGGGGCGTGTCTTTTAGTGCTTTAGCACACTTTTCACAGAGTGAgttaaataaaagcactttGTGTTATTTAGCAGTTGTGTTGTTGTGCACGATGTAAcgtgtggtgtatgtgtgtgtgtgtgtgtgtgtgttactctttAAAAGACtttgaggtcaaaggtcatgttTTTAACAGTTCACtgatttgttatataataaacacAAGACACGGAACCGTTTGTTTCATTGACACAAGAACCTTTTCACGGATACAGGAACTTTGTGATAAAGGCAGGAACTTTTTTTACAGGAACATTTTAATGGTTACAGGAACTTTTTCAGAATTACATGGAACTGTTtcttatttcatgaacataaacTTTTTCACAAGAACACAGGAACCTTTTACAGGAGCACAGGAACTTTCTTATAGGAGCATTTTCAGGAAATTTTTTACAGGACCACAGGAACTTCTATttgtgaaaacaggaacttttTCAGAATTACATGGAACTGTTTCTTATTTAATCACAAGAACACAAGAATCTTTTACAGGAGGACAGGAACTTTCTTACAGGAACTTTTTCAGGAACACAGGAACCTTTTACAAGAGCACAGGAACTTTCTTACAGGAACTTTTTCAGGAACTTTTTTACAGGAGCACAGGAactttttttgtgaaaacaggaacttttttttgtgaaaacagGAACCTTAGAATCCTTCAGAATTACATGGAACTGTTTCTTATTTCAAGACCAGAACTTGTTCCataattttagatatttttatatttgccttCTGGTCATTA

Function

GO:

id name namespace
GO:0060347 heart trabecula formation biological_process
GO:0003171 atrioventricular valve development biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312211.1 True 3675 mRNA 0.48 12 24680620 24689895

Neighbor

gene id symbol gene type direction distance location
LOC113530697 NA coding upstream 56815 24618620 ~ 24623805 (+)
LOC117599218 LOC108275604,LOC102207396 coding upstream 67531 24599158 ~ 24613089 (+)
LOC113530532 LOC108275719 coding upstream 151705 24520879 ~ 24528915 (+)
mdp1 mdp1 coding upstream 365153 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 373959 24299596 ~ 24306661 (+)
aimp1b LOC108275725 coding downstream 3136 24693031 ~ 24698433 (+)
sgms2b LOC108275722 coding downstream 25122 24715017 ~ 24725235 (+)
LOC117599303 NA coding downstream 107334 24797229 ~ 24801608 (+)
LOC117599304 LOC108275642 coding downstream 111997 24801892 ~ 24802529 (+)
LOC117599305 NA coding downstream 113276 24803171 ~ 24804413 (+)
G260677 NA non-coding upstream 63403 24616168 ~ 24617217 (+)
G260623 tcp1 non-coding upstream 76561 24528252 ~ 24604059 (+)
LOC117599259 NA non-coding upstream 151705 24523258 ~ 24528915 (+)
G260632 LOC108275555 non-coding upstream 200820 24477566 ~ 24479800 (+)
G260592 NA non-coding upstream 249929 24405044 ~ 24430691 (+)
LOC113530849 NA non-coding downstream 15392 24705287 ~ 24706115 (+)
G260691 NA non-coding downstream 35952 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 45828 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 55886 24745781 ~ 24751808 (+)
G260664 NA non-coding downstream 79027 24768922 ~ 24771134 (+)
ddx58 ddx58 other upstream 44491 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 227082 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 411353 24268577 ~ 24269267 (+)
G260415 NA other upstream 647896 24032227 ~ 24032724 (+)
G259993 NA other upstream 1291306 23387538 ~ 23389314 (+)

Expression


Co-expression Network