Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113530888 |
| gene name | LOC108275606,LOC107568964 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 24771260 ~ 24774653 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034312218.1 | True | 1259 | mRNA | 0.50 | 8 | 24771260 | 24774653 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113530579 | ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 | coding | downstream | 6187 | 24745883 ~ 24765073 (-) |
| cfi | cfi | coding | downstream | 26035 | 24734614 ~ 24745225 (-) |
| LOC113530848 | NA | coding | downstream | 65931 | 24702380 ~ 24705329 (-) |
| LOC113530806 | LOC108275724,LOC105922125 | coding | downstream | 125527 | 24638291 ~ 24645733 (-) |
| prelid1b | LOC108275727,LOC108413730 | coding | downstream | 173601 | 24592873 ~ 24597659 (-) |
| LOC117599302 | NA | coding | upstream | 433 | 24775086 ~ 24782044 (-) |
| si:ch73-106g13.1 | LOC108275824 | coding | upstream | 53879 | 24828532 ~ 24836728 (-) |
| tec | tec | coding | upstream | 62179 | 24836832 ~ 24851867 (-) |
| LOC113525311 | LOC108414782,LOC103038743 | coding | upstream | 114081 | 24888734 ~ 24898675 (-) |
| LOC117599306 | LOC108275826 | coding | upstream | 147265 | 24921918 ~ 24929386 (-) |
| G260897 | NA | non-coding | downstream | 40717 | 24730292 ~ 24730543 (-) |
| G260895 | NA | non-coding | downstream | 42891 | 24725850 ~ 24728369 (-) |
| G260894 | NA | non-coding | downstream | 45883 | 24724222 ~ 24725377 (-) |
| G260871 | NA | non-coding | downstream | 72836 | 24697969 ~ 24698424 (-) |
| G260885 | NA | non-coding | downstream | 77014 | 24693335 ~ 24694246 (-) |
| G260921 | NA | non-coding | upstream | 69374 | 24844027 ~ 24864890 (-) |
| G260942 | NA | non-coding | upstream | 96061 | 24870714 ~ 24873747 (-) |
| G260962 | NA | non-coding | upstream | 200062 | 24974715 ~ 24975307 (-) |
| G260926 | NA | non-coding | upstream | 268795 | 25043448 ~ 25046293 (-) |
| G260976 | NA | non-coding | upstream | 298058 | 25072711 ~ 25073088 (-) |
| tent5ab | LOC108275717 | other | downstream | 262792 | 24501129 ~ 24508468 (-) |
| LOC113530517 | LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 | other | downstream | 385005 | 24374273 ~ 24386255 (-) |
| reps2 | reps2 | other | downstream | 454845 | 24273737 ~ 24316415 (-) |
| LOC113530810 | LOC108275656 | other | downstream | 791565 | 23973365 ~ 23979695 (-) |
| G260310 | NA | other | downstream | 1007097 | 23763674 ~ 23764163 (-) |
| si:ch1073-157b13.1 | LOC108276418 | other | upstream | 13037 | 24787690 ~ 24795423 (-) |
| G260947 | NA | other | upstream | 106305 | 24880958 ~ 24883145 (-) |
| nfxl1 | nfxl1 | other | upstream | 186368 | 24961021 ~ 24977067 (-) |
| si:ch211-149b19.4 | LOC108275830 | other | upstream | 209326 | 24983979 ~ 25008193 (-) |
| G260972 | ctc1 | other | upstream | 266138 | 25040791 ~ 25042595 (-) |
