LOC117599302


Basic Information

Item Value
gene id LOC117599302
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24775086 ~ 24782044 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312219.1
GCGGGATAGTAACCAGCCAATCCCAGAGCAGGAGGCGGGGCTTGTTGGAAAGCGGGTGAAGGGGGTGGGATTAGCGTTCAATGGCACAGAGCGCGAGAGGAATGAGCTAATTTGTCTTTTTATGAACACAGTGGTGTTTTAAAGCAGAGTCGtgtaagatgaagtgtgtgtcGCTGCACCATGACTTCAGTCCTGGTGACGTCGTGTTTGCCAAAATGAAGGGATATCCTTTCTGGCCTGCCCggATTGCTGTTGGGAAGGCTCCAAGGAATAAGGTCCCAATCTTCTTTTATGGAACACACCAGacaACGTCTCTAGTCCCTAAGGACATTGTGCATTACTGGCCCAACAAAGAGAAATATGGGAAGCCCATCAAACGAGGAGGTTTTGAACAGGCCATGTGGGAGATCGAAAATGACCCCGGGGTCGGCCTCAAAGGTCAAAAGAAAGCCGATATGGTGAGGAAGGTGCAGGAGACGCGGAGGAAGGCGAGGAGTgtggaaaagaagaagaaaaacgaGGCTGACACGCCCACTAATGCTGCAACTCCGACAAAGAATGATAAAACACCTGTGAAAAACAGCACCACTCCGAATAAACCGTCCACCTCAGAGACCCCGACGAGGAGACAGACGCCGAGCCGGGACAGAGATGCCCGGAAGAAGACTGTAACACCTTCTGAAAAAGCGACAACTTCTGCTGATAACGCAACTCGTACTAAAAAACCCGCCCCACCCAAAAGGGTTGTCCTGGCCAAAAAAGCCATTGTTGCTAAGACGACGAGTGCAGCGAAGAAGAAGGACGCTGCCAGGAAGAAGATCCTTACCAAAGCGAAGATGGTCAAAGCCAAGAAGACAACGAAGACTAAGCTGAAGATAAAGCTGCCTATCAGAGTGGAAAAGAACAAGCCCCGTACCCCAGAGACTCGGCACCGGACCCCAGAGACTCGTCTTCAAACCACAGAGACTCGGCCCCCGATCTCCAAGGGTTGGGTGAAGATCACCGATCCACAGCTACAGAGCCCAGAGACTCGGCCTCGGATCTCCAAGGGTTGGGTGAAGGTCACCGATCCACAGTTAGAGGCCCCAAAGACTCGGCCCCGGATCTCCAAGGGTTGGGTGAAGATCACAGATCCACAGTTAGAGACCCCGGAGACTCGGCCCCGGCTCTGCAAGGGTTGGGTGAAGGTCACCGATCCACAGTTAGAGAACCCTAAGACTCGGTCCCGAACCCCAGCAACTCAGCCCCGGATTTCCAGAGGTTGGGTGAAGGTCACAGATCCCCAGTTAGGGAACGCTGAGACTCTGCCCCGAACCCCAGCGGCTCAGTGCCATGCCCCAGAGACTCGGCCCCGGAATTCCAAGGGATTGGTGAAGGTCACAGAGCCACAGCTGCGGACTCAGCTCAGAACTCCAGAGACGCCGCTCCAGACCACAGAGACTCGGCTCCCAGCCCCAGAGCCTCGTCTTCGAACCCCAGAGCCTCGCCAACTTGAACCCCAGAGCCTCGCCTCCCAGCCTCGCCTCAACCCCAGAGCCTCGCCTCCCAGCCCCCAGAGCCTCGCCTCCCAAGCCCCAGAGCCTCGGCTCCAGAGCCTCAGAACCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCCCAGCCCCAGAGCCTCGGCTCAGAACCCCAGAGACTCGGCTCCGGAATCCCAAGGTCACAGAGCCATGGCTACGGCGTCGAGAGACCCGGCTCCAAACCCCAGAGACCCAAGTAAAAACCACAGATGCTCGGCTGAGGGTCACAGAGACTCAGGTGCAAACCCCAGAGCCACGGCTCCAGAACCCAGGCACTCTGCTCCTGAACCCCAAGACTTGGCTGAGGGTCACAGTGCCACGGCTCCAGAACCCTGAGACTCTGCTCCATTGCTCCGAGACTCGCTTCCGCAACCCTGAGATTCGGCTTCAAAACCTCAAAATCTCAGCCTTAGGACACAAATTCTCAGCTCCCGAACCCCAAGGTGACTCTCCAGTTGAACCCCAAGATGCTGCTCGTGAATCCCGAGATGCAATTTCTGAACCTTCAAATGCAACTCCAGTGGAACCCCAAGTCACCACTCCAGTGGAACCCCAAGAGCCTGCTCCAGCTAAACCCAAAGTTGCTGTGCCAGTTGAAGCCCAAGATGTTACTCCACTTGAACCCCAAGTTGCTTCTCTGGTCAAACCCCAAGGCGTTGCTCTGAGTGAGATCTCAAccaggaaacaggaagcagaAGGTGAGGGAGAACGGAGAGTGCTGAGACGGAGGACAGAAGAGCAGAGGGATAGAAACgagaagagacagaagaaagagatggagaagaaACAGCCAGAGGATGAATGGAAGGATGGAGCGGAGCgaaggaagaagaaggaggagattATCCCAGCCATCACTGACACTGTCTCCAGCCCTGCAGCCTCGAGAAGGAAGCAACAGGAAGAGAAACTCCGCCCCTCAGAGCCAGAAAACAGCGAGGTGGGAAAGCGGAAAAGGCGCGAGGCGGACGAGGGAGGACAGAGAGTGCTGAGACGGAGGACGGAAGAGCAGAAGGGAAAGAGGGatagagaagaagaaacagagaaGAAGCAACTGGTGGTTGAGCGGAAGGATGGAgagaaggtgggaggaaaggAGTACaagggagagaagaggaagagagaggaggaggagaagaagaagaagagagaggaggagatggGGGAGAAGAAGCAGAGGAACGACGATGCAGTAGAGAAGGCGActgagaagaagagagaggaggagactaagaagaagaaaggtgaggaggagatggaggaggagacgggagagaagaggaagagagaggacgaagaggaggagaagaagagaaaggaggagacggagaagaggaagagagaggacgaggaggaggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312219.1 True 2957 mRNA 0.56 8 24775086 24782044

Neighbor

gene id symbol gene type direction distance location
LOC113530888 LOC108275606,LOC107568964 coding downstream 433 24771260 ~ 24774653 (-)
LOC113530579 ttc39b,LOC108275605,LOC107750185,LOC107568957,LOC108412195 coding downstream 10013 24745883 ~ 24765073 (-)
cfi cfi coding downstream 29861 24734614 ~ 24745225 (-)
LOC113530848 NA coding downstream 69757 24702380 ~ 24705329 (-)
LOC113530806 LOC108275724,LOC105922125 coding downstream 129353 24638291 ~ 24645733 (-)
si:ch73-106g13.1 LOC108275824 coding upstream 46488 24828532 ~ 24836728 (-)
tec tec coding upstream 54788 24836832 ~ 24851867 (-)
LOC113525311 LOC108414782,LOC103038743 coding upstream 106690 24888734 ~ 24898675 (-)
LOC117599306 LOC108275826 coding upstream 139874 24921918 ~ 24929386 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding upstream 150540 24932584 ~ 24960018 (-)
G260897 NA non-coding downstream 44543 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 46717 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 49709 24724222 ~ 24725377 (-)
G260871 NA non-coding downstream 76662 24697969 ~ 24698424 (-)
G260885 NA non-coding downstream 80840 24693335 ~ 24694246 (-)
G260921 NA non-coding upstream 61983 24844027 ~ 24864890 (-)
G260942 NA non-coding upstream 88670 24870714 ~ 24873747 (-)
G260962 NA non-coding upstream 192671 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 261404 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 290667 25072711 ~ 25073088 (-)
tent5ab LOC108275717 other downstream 266618 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 388831 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 458671 24273737 ~ 24316415 (-)
LOC113530810 LOC108275656 other downstream 795391 23973365 ~ 23979695 (-)
G260310 NA other downstream 1010923 23763674 ~ 23764163 (-)
si:ch1073-157b13.1 LOC108276418 other upstream 5646 24787690 ~ 24795423 (-)
G260947 NA other upstream 98914 24880958 ~ 24883145 (-)
nfxl1 nfxl1 other upstream 178977 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 201935 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 258747 25040791 ~ 25042595 (-)

Expression


Co-expression Network