LOC117599304 (LOC108275642)


Basic Information

Item Value
gene id LOC117599304
gene name LOC108275642
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24801892 ~ 24802529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312222.1
CGGCGATGGTAGAGCGAGATCCCAACACAGAGGAATATTTGGAATTCCGCACGGAGTCGGATCTCTTTCCGTTTAAGTGCCATGTGACGTATTTTGGAGAACCGGTGACTCGGGCCTGGGTCGTGTGCAGCAGAGTGAGGGACTACGCTGACCTGTCTGAGGATCAGCTTCTtaacaaagttGACAAGGACCTGAAAGATGCCATTTATATGGCCAAGGAAGCACTCAGACTGTCTCtgaaggtaacacacacacacacgcataagTCACCCATGTCACATCCAAAAATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312222.1 True 293 mRNA 0.49 3 24801892 24802529

Neighbor

gene id symbol gene type direction distance location
LOC117599303 NA coding upstream 284 24797229 ~ 24801608 (+)
sgms2b LOC108275722 coding upstream 76657 24715017 ~ 24725235 (+)
aimp1b LOC108275725 coding upstream 103459 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 111997 24680620 ~ 24689895 (+)
LOC113530697 NA coding upstream 178087 24618620 ~ 24623805 (+)
LOC117599305 NA coding downstream 642 24803171 ~ 24804413 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 4988 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 54051 24856580 ~ 24868832 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding downstream 68140 24870669 ~ 24881640 (+)
LOC113525303 LOC108275832 coding downstream 197416 24999945 ~ 25007817 (+)
G260705 NA non-coding upstream 26668 24774515 ~ 24775224 (+)
G260664 NA non-coding upstream 30758 24768922 ~ 24771134 (+)
G260697 NA non-coding upstream 50084 24745781 ~ 24751808 (+)
LOC117599308 NA non-coding upstream 65519 24735723 ~ 24736373 (+)
G260691 NA non-coding upstream 73495 24725847 ~ 24728397 (+)
G260711 NA non-coding downstream 3427 24805956 ~ 24806167 (+)
G260713 NA non-coding downstream 24794 24827323 ~ 24829045 (+)
G260718 NA non-coding downstream 27251 24829780 ~ 24830030 (+)
G260725 NA non-coding downstream 35886 24838415 ~ 24839487 (+)
G260736 NA non-coding downstream 61633 24864162 ~ 25022554 (+)
ddx58 ddx58 other upstream 165763 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 348354 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 532625 24268577 ~ 24269267 (+)
G260415 NA other upstream 769168 24032227 ~ 24032724 (+)
G259993 NA other upstream 1412578 23387538 ~ 23389314 (+)

Expression


Co-expression Network