LOC117599305


Basic Information

Item Value
gene id LOC117599305
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24803171 ~ 24804413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312223.1
tTAGTGAAGTTTGGGTTCTGTAGTCGTTAtgtgtcagacagagagagctcagaggaCAGTGATATCGcggAGATGTTGGAGCTGTTTTGTGGGAATGACTGCAGCGATGAGgATTCATGGAGTAAAAAGTCAGCAGgcagaaaacaaaaagagagaaagagagaggggaagaggaGCGGACGGGGAAAAGAGGACGACGAGACGTACGGAGGGAGTGAGAAGAACAAAAGAGTGAAGAagatgaaggaaggaaaagagggtgagaagaagaaaagagtgaTGAAGAAgctgaaggaaggaaaagagggtgagaagaagaaaagagggaTGAAGAAgctgaaggaaggaaaagagggtgagaagaagaaaagagggaTGAAGAagcagaaggaaggaaaagagggTGAGAAAGAACAGAGATCtgaaaaattaaatttcatGCCACTGACATTTCatctggctgtctctctctctctctctctctctctctctgttttttag

Function

GO:

id name namespace
GO:0016769 transferase activity, transferring nitrogenous groups molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312223.1 True 501 mRNA 0.45 4 24803171 24804413

Neighbor

gene id symbol gene type direction distance location
LOC117599304 LOC108275642 coding upstream 642 24801892 ~ 24802529 (+)
LOC117599303 NA coding upstream 1563 24797229 ~ 24801608 (+)
sgms2b LOC108275722 coding upstream 77936 24715017 ~ 24725235 (+)
aimp1b LOC108275725 coding upstream 104738 24693031 ~ 24698433 (+)
LOC113530267 LOC108275728 coding upstream 113276 24680620 ~ 24689895 (+)
zgc:158659 pik3ca,zgc:158659,LOC107571432,LOC107653898,LOC108275608,LOC102200943 coding downstream 3104 24807517 ~ 24826683 (+)
txk LOC108275609 coding downstream 52167 24856580 ~ 24868832 (+)
zgc:56304 g3bp2,zgc:56304,LOC107748926 coding downstream 66256 24870669 ~ 24881640 (+)
LOC113525303 LOC108275832 coding downstream 195532 24999945 ~ 25007817 (+)
LOC117599307 NA coding downstream 206683 25011096 ~ 25013271 (+)
G260705 NA non-coding upstream 27947 24774515 ~ 24775224 (+)
G260664 NA non-coding upstream 32037 24768922 ~ 24771134 (+)
G260697 NA non-coding upstream 51363 24745781 ~ 24751808 (+)
LOC117599308 NA non-coding upstream 66798 24735723 ~ 24736373 (+)
G260691 NA non-coding upstream 74774 24725847 ~ 24728397 (+)
G260711 NA non-coding downstream 1543 24805956 ~ 24806167 (+)
G260713 NA non-coding downstream 22910 24827323 ~ 24829045 (+)
G260718 NA non-coding downstream 25367 24829780 ~ 24830030 (+)
G260725 NA non-coding downstream 34002 24838415 ~ 24839487 (+)
G260736 NA non-coding downstream 59749 24864162 ~ 25022554 (+)
ddx58 ddx58 other upstream 167042 24624937 ~ 24636129 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 349633 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 533904 24268577 ~ 24269267 (+)
G260415 NA other upstream 770447 24032227 ~ 24032724 (+)
G259993 NA other upstream 1413857 23387538 ~ 23389314 (+)

Expression


Co-expression Network