LOC117599306 (LOC108275826)


Basic Information

Item Value
gene id LOC117599306
gene name LOC108275826
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24921918 ~ 24929386 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312224.1
GCGCGGTTTGGGACGCAGACCTTTCCTGCGCTGTGGTGCGGGAGCGCGCGCCTGTCCCGCGCCTTCACCGGGAGCAGAccgggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagcagcaCGTGATCTTCGCGCTCTCTGTAATCTGAGAGTTATTGGTTTGTcggtttgtttgtgttgtttgtgttacaTGCGGTGTGTGAACATGTCCGCGGCCGGTAACGCGTCGCTTCCCCCCTCCGTTAACTTCACCAACCGGTTCGCGCAGCCGCCGTGGCGCGTGGCTCTGTGGTCGCTGGCGTACAGCTGCGTGCTGGTGGTCGCCGTGTTCGGGAACCTGGTGGTCATCTGGATCATCGTGGCGCACAAGCGCATGCGGACGGTCACCAACTACTTCCTGCTGAACCTGGCGGTCTCGGACGCGTCCATGGCGGCGCTCAACACGCCGGTCAACTTCATCTACGCGGCGCACGGGGACTGGTACTTCGGGGACGCGTACTGCAAGTTCCACAACTTCTTCCCGGTGGCCGCCGTGTTCGCCAGCATCTACTCCATGACCGCCATCGCCGTGGACAGGTACATGGCGATCATCCACCCACTGAAGCCGCGTTTCTCAGCCACGTTAACCAGAGtggtgatcgtgtgtgtgtggggagcgGCGGTGGCGCTGGCCTTCCCGCTGTGCTTCTACTCAAAGACCACACCCATTCCCAAGAGGACGCTGTGTTACGTGGCCTGGCCCCACCGCCGCAGTGATGCGTTCATgTACCACATCATCATAGCCGTGTTGGTGTATCTGCTGCCCCTAGTGGTGATGGCGATCACGTACAGCATGGTCGGAGTCACACTGTGGGGGGGCGGCATGCCGGGAAATTCCTCTGACAACTACCTGGAGCAGCTACACGCAAAgcgcaaggtggtgaaGATGATGATCGTGGTGGTGGTGACGTTCGCTCTGTGCTGGTTGCCATATCACATCTATTTCATCGTCACAGGTCTTTACTCCAACATCAGCAAGTGGAAATCCATCCAGCAGGTTTATCTGGCAGTGCTGTGGCTGGCCATGAGCTCCACCGTCAACCCCATCATCTACTGCTGCCTGAAcagcagTCTAATCGCAGAGTCCAACCAAGTTACTGAGCAGATGAGGAGAGGCGTATCTGGAGCACTGGGACAGTCAGAACCAAACCCAGTCCAGATCACACTGCTATCGGCCCTAAACACAGAGTAG

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312224.1 True 1237 mRNA 0.58 6 24921918 24929386

Neighbor

gene id symbol gene type direction distance location
LOC113525311 LOC108414782,LOC103038743 coding downstream 23243 24888734 ~ 24898675 (-)
tec tec coding downstream 70051 24836832 ~ 24851867 (-)
si:ch73-106g13.1 LOC108275824 coding downstream 85190 24828532 ~ 24836728 (-)
LOC117599302 NA coding downstream 139874 24775086 ~ 24782044 (-)
LOC113530888 LOC108275606,LOC107568964 coding downstream 147265 24771260 ~ 24774653 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding upstream 3198 24932584 ~ 24960018 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding upstream 48508 24977894 ~ 24982298 (-)
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding upstream 85826 25015212 ~ 25026090 (-)
ctc1 NA coding upstream 99409 25028795 ~ 25041468 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding upstream 118234 25047620 ~ 25053567 (-)
G260942 NA non-coding downstream 48171 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 57028 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 191375 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 193549 24725850 ~ 24728369 (-)
G260894 NA non-coding downstream 196541 24724222 ~ 24725377 (-)
G260962 NA non-coding upstream 45329 24974715 ~ 24975307 (-)
G260926 NA non-coding upstream 114062 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 143325 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 159253 25088639 ~ 25089918 (-)
G260947 NA other downstream 38773 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 126495 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 413450 24501129 ~ 24508468 (-)
LOC113530517 LOC108273546,LOC108270753,LOC108268894,LOC108273219,LOC108261257,LOC108273545,LOC108270747,LOC108261406 other downstream 535663 24374273 ~ 24386255 (-)
reps2 reps2 other downstream 605503 24273737 ~ 24316415 (-)
nfxl1 nfxl1 other upstream 31635 24961021 ~ 24977067 (-)
si:ch211-149b19.4 LOC108275830 other upstream 54593 24983979 ~ 25008193 (-)
G260972 ctc1 other upstream 111405 25040791 ~ 25042595 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 147387 25076773 ~ 25079035 (-)

Expression


Co-expression Network