ctc1


Basic Information

Item Value
gene id ctc1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 25028795 ~ 25041468 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312227.1
atgatgCTCAGTGTGGCGGTGTGCTTGTTGGAGAGTGAGTGCAGGGTATGTGGAAGTGTGCACTGTGAGGTCCTGAGCTCGTCTCCGCTCTGGCTCGGGAGGCTGATGCTCTTCCCCACCTGGaactacatttcccacaatgcaccaggACCGGGACAGCAACCTGAAAGCTGCTTAGAGCTGATCGACTCTCCCGTCTGTGTGACCCCTGACCTCACGGCGTTTGACCCCAGAGGGTCACTGAGTGATGTCATTGGGGTGAAGAAGGCAGCCAGACTGCTGAGGAGGAAgagcagtagaggagtgtgtatgtgtgtgtatggggaggtgtgtgtgatctgccccctgctggccaTCTCTGGAAAAACCTTCTTCTGCCTCGTCCTCAGTGAGGAAGACTCGACTGTCCCTGTACTGGTCACGgtcccagagtgtgtgtactggagacagtgtgtgtgtgtaggacagaGTCTGTTTATTTCAGCGCTGCGTGTGTGTTCTGTTCGAGGGTGGGCGGGGCATCGAGTGCTGTCTGTCACCACAGAGTCCCGCCTACATCCAAACTCCAAAACACACGGAGAGTCTgaggacacagacacacactcggaATCACACTCGGaaacgcacacagacacacactcggaATCGCACTCGGAATCGCACTCGGAAAGGCactccgacacacacacagacacacactcggaATCGCACTCGGacacacacctggacacacacctgcagcaggACCCTGAGTGTGAGGAGGCGCAGGTGCATGATGGTCACATGCGAACAAAACTCTCCAAAATCATCAGCTACAGGggccgCATCACTAGAGTCCAGGATGCGGAGGCGGGGCTTTACGAGATTGATGGGAAGGTGTTGCTGTGTCTGGCCTATCAGCCGCGGAGGAAGTGGGGCGGCGGCTTAAGAGCGGGGGCGGAGATTGAGcTCCACAACGTCCACTTCCTGTTCCGGCCGTCTCCGCTCGCCCCTGACGTCGTGCTGTGTGCGTGCTTGCGCTCCAGTGTCTCCGTGACGACCTTCAGTCCgctgaggtcaaaggtcactcTGCAGAGGTCAGACAGCCCCCTGGTGCATTTCCTGTTGGAGAGGAACCTCGGCGTGTCGGAGTACCTGTGGCTCTGCTACTGCAACGCTGCGCTCACTGACagGTTGTGTCCGCGGTGGCTGTGTGAAgcgcgagtgtgtgtggtggcagGAAGGTTACTGCAGGTCATTTTAGGAGACAAAGAGACGAAGAAAGACAAGAGAgacatttataaagaaatgctgcaggacacacacacctgtcctctcactcagtactgtGTGTCTAGTCCCAGTGTGTCCCTGTACTCTGTAAAGGagctctgtgattggctagAGAAGGAGAGTTGGgcgtgtctctctctgtcgtcGCTCCTTCCATCTTCAGCGTGTCACATGACCCAAGCTCAGCTGAACCCGCTGCTGTCATGGTCagcgcagacacacactctggcgcagacacacactctggcgcagacacacactccggcgcagacacacactctggcgcagacacacactctggcgcacacacacacagtgttagtgGGCGTGTTGGAGATGAGTGTGGGCAGAGCCACAGTGAGGCTGGTGGACCAGACTGGAACCatcgactgtgtgtgtgtgcagagttcaACTTCAGAGCAGTGTGGGTCCATCGATACGGCATGGatggggtgtcTGGTGTGTATTCGTCGGTGTACGTTAGTGATGGAGCGATTCATGAAGACAAATTTCCCCTCTTGGAAACATCTGGACCAGCACagatacatcacacacaaacactgcagagtgtatatctgtgtgtgtgtggatgatcTGCACATTCTGAGCCCCTCAACCGCCATGAGCTCCCTCCtccgagagagagaaaatgagcgagacacagagagacaaaagaagaggaagaggaaagaagaagggcggaaggaagaagagaaatcatccctccatcacgaagaaagagaagaaggtgaaggtgaagaaggggatggagggatggaggtgGACGAGGGTATGGCGATCCCGTCGCGAGCCAGCAGGAGGAGGGAGACCGCGGGGACGAGTGCAGAATCCTGTGTGTCACTGCTGTTTCGTGTGCACTCCAAACAGGGCGTGGCTTTTCGAAATGTCCAGTCGACCAATGAGGCGCATGCACTTACTCTTAGCTTTGTCGTCAAGGCAACACGCCTCGGAGACGTGCAGGTTTGGGACAGAGACCTGAGGAACCGCagagtggaggagagagagatgaagggaGCAGAGATCACCATGGAGCTGCAGTTTGTGGACTCTGCTGTTCGTTGGTTTCCTCTGCTGCAGCCAGGAACAGTGTACAGACTCATCGCtctacacacacaggacgTGGCCGTGTTGTCCTGTAGCTGTGTTCCTGCGAGGGGCGGAGTTTCTCTCCTCAGTAACCCCGCCCTCCTCATACAGCCTAAGTggcgcatacacacactcgcaccACCTCTGCTTCTGTcacagCCAGAGATTCAGAGGCTGATGAGTGTCTCTGAAGTCCTCCAtgccagCTCAGCTGACGTCGTCTCCTTTTATGGAGTGATTTCTGAGCGAATCACACTGCAGGAGGAGACGAGTAAAACCCCCAccatccaatcactgatcagcactAAAGacgGTGTGATGGAGACAGGTCTGCGTGTGCGTCTCACTCTGCAGGATGTCGAAtctccacatcacacactgcaggtGTACCTGGATTTTACCCACAATCCCTACACACCTGGACTCATCACCGGGGCAACCGTTCACCTGCACCACTTCCAGCGCaaagtgtctgttgtgtgtaatgtgtactgTTGGTCGCTGCCCATCAGCTGTGTGACAGTGGCAGGTCTGggGTCAGTTAAGCCCCGCCCTCCTcctcccacaatgcacctgggTGAGTGGGCTTCAGTTCGGGCAGAGCACGGCATCGTGGgtcaggtcagaggtcatgtggtgtgtgttctgtctctgaggctgcagtggacGTGTTCTCTCTGTGGGAGTGTCTTCAGACAGGCTGCCTGCACTCGACGCTGCCCACCATGTGACTCTACCAGCGCCGTGTTTCAGGCCGAGGccaaagtggtAGTAGAAGACGGAACAGGTGAGGCTCAGGTGTGGTTTCCTACAGAAACACTGGCCAACCTGCTGCAGCTAGGCGAGTCAGAGTGGGAGGGGCTTCAGCGGCTTgtcagggtcaaaggtcatgtgAGAATATACACTCGTGGGCGGAGCATGgtgtgtgaTGTGGACCCTGATGATCCGCTGGTGCTgtatctgtgctgtgtgtgttccagcAGCGCAGTGTGGCGCCACATCACACTCACCTGTAAACTGCGCTCTCAAAAGCCAGagaAAGCCCATTTGAGGAAAGTTAGCCGAGGAGACCGAGAGTTCCTCACCAAGTTTCCCAAACCACTTCAACtacagtgcacacacatacacacactcacatagacacacacacatacacacactcacatagacacacacatacacacactctcacatagacacacat

Function

NR:

description
CST complex subunit CTC1

GO: NA

KEGG:

id description
K23311 CTC1; CST complex subunit CTC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312227.1 True 3583 mRNA 0.55 22 25028795 25041468

Neighbor

gene id symbol gene type direction distance location
tfr2 tfr2,LOC108412633,LOC107673155,LOC107676171 coding downstream 2705 25015212 ~ 25026090 (-)
cnga1b cnga1,LOC107748929,LOC107731257,LOC107567610 coding downstream 46497 24977894 ~ 24982298 (-)
corin corin,LOC107731243,LOC107572417,LOC107748931 coding downstream 68777 24932584 ~ 24960018 (-)
LOC117599306 LOC108275826 coding downstream 99409 24921918 ~ 24929386 (-)
LOC113525311 LOC108414782,LOC103038743 coding downstream 130120 24888734 ~ 24898675 (-)
LOC117599278 anp32b,LOC108275503,LOC108412630 coding upstream 6152 25047620 ~ 25053567 (-)
sh3gl2b sh3gl2,LOC108276379,LOC102797997,LOC100698524,LOC101160542 coding upstream 15450 25056918 ~ 25067948 (-)
LOC113525390 ephb4,LOC108276001 coding upstream 64240 25105708 ~ 25111538 (-)
G260962 NA non-coding downstream 53488 24974715 ~ 24975307 (-)
G260942 NA non-coding downstream 155048 24870714 ~ 24873747 (-)
G260921 NA non-coding downstream 163905 24844027 ~ 24864890 (-)
G260897 NA non-coding downstream 298252 24730292 ~ 24730543 (-)
G260895 NA non-coding downstream 300426 24725850 ~ 24728369 (-)
G260926 NA non-coding upstream 1980 25043448 ~ 25046293 (-)
G260976 NA non-coding upstream 31243 25072711 ~ 25073088 (-)
G260979 NA non-coding upstream 47171 25088639 ~ 25089918 (-)
si:ch211-149b19.4 LOC108275830 other downstream 20602 24983979 ~ 25008193 (-)
nfxl1 nfxl1 other downstream 51728 24961021 ~ 24977067 (-)
G260947 NA other downstream 145650 24880958 ~ 24883145 (-)
si:ch1073-157b13.1 LOC108276418 other downstream 233372 24787690 ~ 24795423 (-)
tent5ab LOC108275717 other downstream 520327 24501129 ~ 24508468 (-)
LOC117599229 if4e2,eif4e2rs1,LOC106608398,LOC105891435,LOC107679374,LOC108276381,LOC105007409 other upstream 35305 25076773 ~ 25079035 (-)

Expression


Co-expression Network