LOC113530341


Basic Information

Item Value
gene id LOC113530341
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19346311 ~ 19350848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403138.2
tcacttcAACTCATTTTGAAAAAGTGTTGTCTTTTTTGATACTGGCTCCAAACCAGTTAGTTTAGCTATCTAGCTTTGCTAACGGTGGTAATTTGTTTTGAACTAAAAAAGGTCTTTAAAAACGAATTTAAGCgacttgtttcatttttaagcaaacaaaaaaagaaacggTTAACCTAAATTCTGAGTGAgttgtatctttttttaatcatttaagctAGCTTTATACGgtcttaataataaatttacCGTCATTACAAGCTAACGTTCAAGTAGCGGAGATAAACCTGTCGCAGATTCGTTTCCGGATCCGTCTTCTAACtaactataataaaaaaataacgtTAATGTTATGTACCAGGATACCTAGCGCTAGCTAACGTGCTAGACAGTTTAAAGAAATgtcatttagtttatttaaacaGGAGCTGTCCGAAATGTGCGTGTTAGCTAAACATTAGCGGAGATAACGCAGCTCAAAGAAACCAAAATGGCAACAGAAAAGCTTGAAGCGAGTATTAATGTTAAGCTAGCTACTTTAGCTTTTGCACAGAGGAATTAATTTACtattaacacacaaaaataaatctcaCCTTCCAGTTGAGAGCCTGAACAGCGCTTCTGAATCTGTTACGCTAAGGACATCCTGTTACTTAGCACTATTTTCTGCGGGAATGACGGGAAGTGTGGTCACACCCCTGCGAACCCGCGGCTTCACCCACTGAAAGCGAGCCAAGCTTCCGTGATGACtccatttacagtaaataaacagCTGGTTAAAGCCCATGAGCTCATGTGTTTAGCGTAAACTCgtttttgtgttcatttaccTGTAGTttatacttaatttttttttgttttggtttgttttttgttttgttttgttttttaggcGTGGCTGATGGTGCGTTCAAGTCATGTGGGAAAGGTTGTGTTTCCGAGTTGAACGCCCATGAACGCCACCacaaagtcgtaattacgaGTGGGGAAACTCGGGATGTTGTTTGAGCTCTGAGTTTCCGAGTTGGGGTGTTGTTTCAGTAAGAAAACATGGCGGAATGTCTGTAGTTGAGGGTAAATTAGTTAGTATTAAGTAGCATTAATGAGTATTTAGCAGTGCCTTGTCGTTgtcagagatttttatttacaataaaacaagctaattGCCTGCACAGAATACGATAGCATTATACAGTTACGATATAATATGTAACGATAAAGTTTACAGTggcttcataaattgattaaaatcataaaaagagcaaaacacacctgctgcgcattctttgttcttcattttctagcAATAGAGTTAAAAaactttatgtatttttttgtagttaattaagagAAGGTACACCGCTATTTTGCTCCGAATAAAAAGTGACTTGAACGAACCTGAGGCCGTAATTACGACTTCCCAACTGGTAAATACGACTTCCCAGGAGCACTTGAACGCGCGTTACGTAACTGTTGGTTGTAGGAGGAAGTGCTATGGAAAGCCGAAAGggtcaaaacacacagaaacacgtACAATGCGTCTCAGACCAGGAGTGCTCACACTTCCATGACAAGAGATCtactttttcatattatttttatgAAATCGCAAGAGTAATATACAGCATCGGGGGCGTGGCCGAGCGTCAGcggtggatggagaggaggcgggtcgaACCAGCAGCCTCGCTGGCTTTAGCATTGCTGCATCTACCTTGCCTTGCTCTCGACAAACCTGTCCACTATGACTGGTCCTCACAAACAGTTGCAAGGGGTTTTGGATCAGAAACCACTACGGAGTCCACATCATGAGGGCTTCACCAAAGGGTAGAAGTAAGTGTGCACAAAAATGGCACTCATGAGAACCGTTTTAAAGCCTAGAATGAGAATGAAATGGAATGGGATAAGCTACAGTATCGCCATTTGGTTGGCTGAAACTCCAACTGTACCACATATGCAAATTAGATGTACCACACATGAATGAATGTCATTTATGTTTTGTGCAAGCTGGTAGCGTTTCAGTCAAGATGCAAATACCCTACAAAAATCTAGGTACTAGGAACTGTAACCAGTGTATGCTCTAAGTATATTACTTCTACAGCAGTCATTTTTACAGATCAAAATGCTAAATCTGTTGACAAAAATGTATTGACTGTGTTTCATAATTCTGGGAAGATCAACTTATTTGACAATGTCATGTTCGAAAGGTCTTGTCAGACTCTGTAAGTCACTTTGAAACACTGGAACAGCTTTGCATTTTATGACCTTTTTAGACTTTTTCTGAAATTGTGGTTTTTGCCATTGTTTCTAGCCAGAAGAAGGTAGGTAGTACAACgttgcaaatataaaaaatacagtaaggGAGGAGCAGACCTTAGAGACTCGAACATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403138.2 True 2393 lncRNA 0.39 3 19346311 19350848

Neighbor

gene id symbol gene type direction distance location
atp6ap1b LOC108275744 coding upstream 14337 19322799 ~ 19331974 (+)
itih6 itih6 coding upstream 36477 19295519 ~ 19309834 (+)
pfkfb1 pfkfb1,LOC108276267,LOC108425577,LOC107574688,LOC107673088 coding upstream 52110 19283497 ~ 19294201 (+)
si:dkey-78k11.9 NA coding upstream 70558 19273287 ~ 19275753 (+)
ccn5 wisp2 coding upstream 75089 19263417 ~ 19271222 (+)
ptpn22 NA coding downstream 88588 19439436 ~ 19465336 (+)
zgc:158263 LOC108276042,LOC108441406 coding downstream 433723 19784571 ~ 19794997 (+)
zbtb48 zbtb48,LOC102780700 coding downstream 488863 19839711 ~ 19848662 (+)
syt6a syt6,syt6a,LOC108433426,LOC107673111,LOC107591076,LOC107593918 coding downstream 549166 19900014 ~ 19965413 (+)
sdf4 sdf4,LOC107591077,LOC107673072,LOC107716138,LOC107687443 coding downstream 686573 20037421 ~ 20043667 (+)
G257245 NA non-coding upstream 7475 19289920 ~ 19338836 (+)
G257231 NA non-coding upstream 34485 19260239 ~ 19311826 (+)
G257242 NA non-coding upstream 94514 19251445 ~ 19251797 (+)
G257234 NA non-coding upstream 100604 19243185 ~ 19245707 (+)
G257232 NA non-coding upstream 104743 19241112 ~ 19241568 (+)
G257256 NA non-coding downstream 3879 19354727 ~ 19359740 (+)
G257255 NA non-coding downstream 6663 19357511 ~ 19361051 (+)
G257283 NA non-coding downstream 42689 19393537 ~ 19393903 (+)
G257287 NA non-coding downstream 52648 19403496 ~ 19405521 (+)
G257609 NA non-coding downstream 114882 19465730 ~ 19466227 (+)
pkig NA other upstream 123752 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 411992 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 2157934 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 2221360 17071136 ~ 17124951 (+)
G256046 NA other upstream 2837931 16508025 ~ 16508380 (+)
G257622 LOC108276210 other downstream 127454 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 274681 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 1039961 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 1159396 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 1552257 20903105 ~ 20907459 (+)

Expression


Co-expression Network